Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02057 ATGGGTTTCCCAGTGGGGTACTCGGAGCTCCTCTTCCCGAAGCTTCTCCTTCACATCCTCTCCCTCCTGGGCCTCCTCAGGAAGCTGATTTGCAGCCTCCTCCGCTTCATGGGCCTCCACGACTTCCTCGAGCCCGACATTGCCTGGGCCGAAACCCAGACCCGAGTGCCCGAAGAGTTCGAATCCGTGTCGGCCACGCTCATCCGGGAAATCCTGCCGGTGGTGAAGTTCCGGGAGCTGGTGGACCCCCCGGAGACGTGCGCGGTGTGTCTGAGCGAGTTCGAGGAAAACGATGAGATCAGACGGCTGGCGAATTGTCGTCACATATTCCACCGAGGATGTTTGGACCGTTGGATGGGGTACGATCAGAGAACCTGCCCTCTTTGCAGAACGGCCTTTATACCGGACGAAATGCAAGGTGCTTTTATTCAGAGACTCTGGGCTGCCTCTGGGATCGCTGAATATCATCCACATGTTAATCCTTTGTAG 489 0.5706 MGFPVGYSELLFPKLLLHILSLLGLLRKLICSLLRFMGLHDFLEPDIAWAETQTRVPEEFESVSATLIREILPVVKFRELVDPPETCAVCLSEFEENDEIRRLANCRHIFHRGCLDRWMGYDQRTCPLCRTAFIPDEMQGAFIQRLWAASGIAEYHPHVNPL 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02057 162 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 156 - -
Gma05g02057 162 SMART ring_2 87 129 IPR001841 -
Gma05g02057 162 CDD RING-H2 87 130 - -
Gma05g02057 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 135 IPR013083 -
Gma05g02057 162 ProSiteProfiles Zinc finger RING-type profile. 87 130 IPR001841 -
Gma05g02057 162 Pfam Ring finger domain 86 130 IPR001841 -
Gma05g02057 162 SMART ringv_2 86 130 IPR011016 GO:0008270
Gma05g02057 162 SUPERFAMILY RING/U-box 67 136 - -
Gma05g02057 162 PANTHER BRH1 RING FINGER PROTEIN 1 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02057 Gma-Chr5 41811922 41812410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02057 1 151 C3H Transcription Factor Family AT1G63840 57.051 6.30e-58 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02057 K16281 - gmx:100789020 283.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02057 05 41811922 41812410 Gma05g02057 05 41811922 41812410 ECH
Gma05g02057 05 41811922 41812410 Gma08g00160 08 1362860 1363582 GST
Gma01g02213 01 57346032 57346587 Gma05g02057 05 41811922 41812410 PCT
Gma11g00205 11 1628716 1629671 Gma05g02057 05 41811922 41812410 PCT