Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02053 ATGGGCGGTTGCTGTTGTTGTTGTTCTTCTAAGGAGACTGTGTTGAGCGCTCCACCTGCGTACTACTATCAGTATCCAAGAGCATCAGAAGAGCATGTTCCTCTATCTTCTCACCCGGGTGCTGCTTCTGCTTTCTCTGGGCGGCTATTGGTTGATACTAATCTAGATACTTCATCTCCTGATACTTATAGACCTCCTCCTGCTCCTATCCCTTTCAATGTTACCTTAGGTACCACTCAAACTCCACCTGCGGCTCAAGAAATTCGTAGTGACAAGAATAATACTTCCTTGCCTTCTACAAATTCTAATGCAATTCAAGAACCAGTTGCTAGAGACATTCATGGGACCTCAGCTAAGTTGGAAGAGCCGAAGGAATCCGAGTGCAAAGTTCAGACTGATCTGGAGCTAGATTCTGCAAAGGGTTCCGAAATTGAACTTGCTAAGTCGGGGAAACCTATAGATTTAGTGGAAGAGGAAGATGCATGCCCAATCTGTTTAGAAGAATATGATGCAGAGAATCCAAAACTCGCAACAAATTGTGACCATCATTTTCACCTTGCATGCATTCTGGAATGGATGGAAAGAAGTGAAACTTGCCCTGTGTGCGATCAGGATTTGGTTTTCGACCCTCCCATTGAATAA 642 0.4424 MGGCCCCCSSKETVLSAPPAYYYQYPRASEEHVPLSSHPGAASAFSGRLLVDTNLDTSSPDTYRPPPAPIPFNVTLGTTQTPPAAQEIRSDKNNTSLPSTNSNAIQEPVARDIHGTSAKLEEPKESECKVQTDLELDSAKGSEIELAKSGKPIDLVEEEDACPICLEEYDAENPKLATNCDHHFHLACILEWMERSETCPVCDQDLVFDPPIE 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02053 213 MobiDBLite consensus disorder prediction 83 107 - -
Gma05g02053 213 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 213 - -
Gma05g02053 213 CDD RING-H2 162 202 - -
Gma05g02053 213 Pfam Ring finger domain 161 202 IPR001841 -
Gma05g02053 213 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 213 - -
Gma05g02053 213 ProSiteProfiles Zinc finger RING-type profile. 162 203 IPR001841 -
Gma05g02053 213 SMART ring_2 162 202 IPR001841 -
Gma05g02053 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 208 IPR013083 -
Gma05g02053 213 SUPERFAMILY RING/U-box 156 209 - -
Gma05g02053 213 MobiDBLite consensus disorder prediction 83 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02053 Gma-Chr5 41776675 41778310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02053 1 209 C3H Transcription Factor Family AT5G41350 53.774 1.59e-68 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02053 - - gmx:100790079 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02053 05 41776675 41778310 Gma08g00156 08 1319978 1322892 GST