Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02029 ATGGATGGGAGAGAAGCTATGGCATTCTCTGATGGCTCAGCTCCATATTACATGCATAGAGTAGGGGTTGGAGGGTCTGGCTCTGGTTTCCAACCAGCCCCTGGGTTCAGACCTTTGTCAAACACTGGCATTCAAGCTGAGTCAAATGCAAGGGGTGGTCAGGGTCAGGGTGGTGGTTCTGTAGGGTCTAATTCCCCTTTTTCAGTGGAGCCACCTCAGGGTCATGCCAATTTTAACCATGGCATCGGCATTGGGGCACCTTCAAGCGAGCCTGTGAAGAAGAAAAGAGGGAGGCCCCGTAAATATGGTCCTGATGGTGCAGTTTCTTTGAGACTGTCTCCAATGTCTGCCCCTGCAAACTCCACTCAGGATGCAAGTGAAACCACCCCTTCTCAGAAAAAGGCTAGAGGGCGCCCTCCTGGCTCTGGAAGGAAGCAACAGCTAGCTGCTTTAGGTGAATGGATGAATAGTTCAGCAGGGTTGGCCTTTTCACCTCATGTTATCACTATTGGAGTTGGGGAGGACATTGTGGCAAAATTATTGTCATTATCACAGCAGAGACCAAGGGCTCTGTGTATCATGTCGGGCACTGGGACAGTATCTTCAGTCACTCTGCGGCAGCCTGCTTCTACCAATGCCAGTGTAACTTTTGAGGGACGATTCCAAATACTATGCTTGTCTGGTTCTTACTTGGTTGCCGAAGATGGTGGACCCTTGAATAGAACTGGTGGCATTAGTGTTTCACTCTCTAGCCCTGATGGCCATGTTATTGGTGGTGGTGTTGCTGTGCTTATTGCTGGAAGCCCCGTGCAGGTGATGTTGTGCAGTTTTGTTTATGGCGGCTCAAAGACCATGTCTAAACAAGCAACCACTCTCAAAGATGAAAGTTCAGAGCCACCTCCTCAGCATAACGACAAGTTAGCTTCTCCAGCCAGTGCTCCTGCTCCACCTGGTCAAAACTTCCTCCCTCTTTCTGCAGCAAACCTTTGGCCTGGATCCCGACCAGCAGAGCTGAAAAGCGCACACATGCATACTGGCATCGACTTAACTCATGGGTGA 1059 0.5014 MDGREAMAFSDGSAPYYMHRVGVGGSGSGFQPAPGFRPLSNTGIQAESNARGGQGQGGGSVGSNSPFSVEPPQGHANFNHGIGIGAPSSEPVKKKRGRPRKYGPDGAVSLRLSPMSAPANSTQDASETTPSQKKARGRPPGSGRKQQLAALGEWMNSSAGLAFSPHVITIGVGEDIVAKLLSLSQQRPRALCIMSGTGTVSSVTLRQPASTNASVTFEGRFQILCLSGSYLVAEDGGPLNRTGGISVSLSSPDGHVIGGGVAVLIAGSPVQVMLCSFVYGGSKTMSKQATTLKDESSEPPPQHNDKLASPASAPAPPGQNFLPLSAANLWPGSRPAELKSAHMHTGIDLTHG 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02029 352 MobiDBLite consensus disorder prediction 1 147 - -
Gma05g02029 352 Gene3D - 165 294 - -
Gma05g02029 352 Pfam Plants and Prokaryotes Conserved (PCC) domain 165 278 IPR005175 -
Gma05g02029 352 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 352 IPR039605 GO:0003680
Gma05g02029 352 MobiDBLite consensus disorder prediction 114 135 - -
Gma05g02029 352 SUPERFAMILY AF0104/ALDC/Ptd012-like 162 280 - -
Gma05g02029 352 MobiDBLite consensus disorder prediction 288 326 - -
Gma05g02029 352 MobiDBLite consensus disorder prediction 41 72 - -
Gma05g02029 352 CDD DUF296 165 277 IPR005175 -
Gma05g02029 352 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 352 - -
Gma05g02029 352 ProSiteProfiles PPC domain profile profile. 157 298 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02029 Gma-Chr5 41565178 41567935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02029 1 352 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 49.490 1.50e-95 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02029 - - gmx:100798706 670.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02029 05 41565178 41567935 Gma05g02029 05 41565178 41567935 ECH
Gma05g02029 05 41565178 41567935 Gma08g00133 08 1108622 1112865 GST
Gma01g02198 01 57215903 57220322 Gma05g02029 05 41565178 41567935 PCT
Gma11g00218 11 1735143 1740146 Gma05g02029 05 41565178 41567935 PCT