Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02016 ATGGCATTCAGCGGGACCCAACAGAAATGCAAGGCTTGCGACAAAACTGTTCACTTTGTCGAAGGTTTATCTGCCGATGGAGCTGCTTATCACAAGAACTGCTTCAGATGCAGCCATTGCAATGGCCTTCTTGCGATAAGCAATTACTCATCCACCGAAGGAGTTTTGTACTGCAAGGTGCACTTTGAGCAGCTTTTCAAGGAAACTGGAACCTACCCCAAGAAATCCCAGTCGTGTAAGAGCCCTTTTAATAGAGCACCAAGCAAGCTTTCTGCCTTCTTCTCTGGGACTCAAGAGAAATGTTCAAAATGCAAGAAAACCGTATATCCATTGGAGAAGTTGACCGTGGAAGGCGAGTTTTACCACAAATCATGCTTTAGGTGTGCACATGGAGGATGTTTCCTGACCCCTTCAACCTATGCTGCTCTAGATGGATATCTTTACTGCAAGCCCCACTTCTCTCAGTTGTTCAAGGAGAAGGGTAGCTACAGTTATCTGTCCAAGCAAGCTTCATTGAAGAAAAGTGAAATGCAACAACAAGAACAAGAGGCTGTGGAGAAAGCTACTACAACCGATGATGATCGCTCAGAGTCAGAGCCAGACACGACAACAACAACAAAGGAAGCTGAACAAGCTGATGATGATCACTCTGAGCAAGAGCACTAG 666 0.455 MAFSGTQQKCKACDKTVHFVEGLSADGAAYHKNCFRCSHCNGLLAISNYSSTEGVLYCKVHFEQLFKETGTYPKKSQSCKSPFNRAPSKLSAFFSGTQEKCSKCKKTVYPLEKLTVEGEFYHKSCFRCAHGGCFLTPSTYAALDGYLYCKPHFSQLFKEKGSYSYLSKQASLKKSEMQQQEQEAVEKATTTDDDRSESEPDTTTTTKEAEQADDDHSEQEH 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02016 221 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Gma05g02016 221 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 93 126 - -
Gma05g02016 221 MobiDBLite consensus disorder prediction 171 221 - -
Gma05g02016 221 SMART lim_4 9 61 IPR001781 -
Gma05g02016 221 SMART lim_4 100 152 IPR001781 -
Gma05g02016 221 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Gma05g02016 221 Gene3D Cysteine Rich Protein 95 165 - -
Gma05g02016 221 Gene3D Cysteine Rich Protein 4 74 - -
Gma05g02016 221 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 74 - -
Gma05g02016 221 Pfam LIM domain 10 65 IPR001781 -
Gma05g02016 221 Pfam LIM domain 101 156 IPR001781 -
Gma05g02016 221 MobiDBLite consensus disorder prediction 171 185 - -
Gma05g02016 221 MobiDBLite consensus disorder prediction 186 221 - -
Gma05g02016 221 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 127 165 - -
Gma05g02016 221 ProSiteProfiles LIM domain profile. 99 159 IPR001781 -
Gma05g02016 221 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 218 - -
Gma05g02016 221 PANTHER OS06G0237300 PROTEIN 1 218 IPR045268 GO:0051015
Gma05g02016 221 CDD LIM1_SF3 6 68 - -
Gma05g02016 221 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02016 Gma-Chr5 41483174 41484701 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Gma05g02016 LIM 2.5e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02016 - K24413 gmx:100499865 449.899