Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02013 ATGTGGGGTTGGATGGTCGGGGAAGCGCGTAGGGCAGCGTGCAACTGGAACTGGGTTTCGCTCCGAAGCATGGGTGGCGGTCCCAGAACCTTTCCCGGCGGCGTGAACAAGTGGAAGTGGAAGCGCATGCACGAGAAGCTCGCCAGAGACAAACAGAACAGACTCATCCAACAAGAGAAGCAGCTCTACCCAGCTCGCATTCGCTCCCACATCCGCTCCTCCCTCTCCCCCGACCACCGCTGCCGCCACTCACCGCCCTCTCTCCCCCAACGACCACTTCAAAGCCCTCGCCGACCGCTTCGTCAAAGACGGCGCCGAAGACCTCTGGAACAACCACGACGTCGTGTTGGGGCCCACAAATATAGGTTTTGGAGAAAGGGTAGTGATGATTCTTCTTCTGGTGAGAGCGAGGGTGAGATTGAAGTTGAATTGAGTATGAAGAAGAGGGGTAGTAGTGCTTCTTTAGGGGAGTATGATGTCAAGAGAGAGCGGAGGGTTGTGCCCAAGACTTCTCCAGAGTTTGAGTTTATTAGTTATGAGCTTAATAAGAGGAAGTTGAGCCAAATTGAGGACCAACAGAGTGAGCAACAACAAAGCAATGAAAGCATTCTAAGCAACACAAGACTAAAGTGGTTGATGCAGCCTCAATTATGCTTGCAGAGCCTTGACGAGTGTGGTATATCGCCGCTGACGGTCAAGGCACTTTCTTCAGCTGGCTATGTTCATATGACCCGCATACGAGAGGCTAGCCTACCTATTTGCCTTGAGGGGATGGATGCTGTAGTCAAAGCTAAAACTGGCACTGGAAAAAATGTAGCTTTTTTGGTGCACCCTACTTCTTTTATTTTTAACACACTGCATTCTGTTTTTTTTTTCCTTATCTATGATGTTGAGCGCAAACAGCTTCCTGCTATTGAAACAGTTCTGAAAGCTATGAGTAGCAATACGTCTCAACGGGTGCCCCCAATATATGTTCTAATTCTCTGCCCTACCAGAGAACTTGCTAATCAAGTTGCTGCTGTAGCAAAGGTTTTGCTGAAATATCATGATGCCATCAGGGTGCAGACTCTTGTTGGAGGCATACGATTTAAAGTTGACCAAAAACGCCTTGAATCAGATCCATGCCAGATACTTGTTGCTACACCTGGTAGGTTACTGGATCACATTGAGAATAAGTCTGGAATATCTCTGCGGTTAATGGGCTTGCGGACGCTTGTACTTGATGAAGCTGATCATTTACTGGACCTAGGATTCAGAAAGGATGTAGAAAAAATTGTTGATTGTTTGCCCCGTCAGCAGCAATCTTTGCTGTTTTCTGCAACCATACCAAAGGAGGTCCGTTGTGTATCTCAGCTTGTTTTGAAAAGGGAACACAAATATGTTGATACAGTTGGAATGGGTTGTGTAGAAACTCCTGTGAAGCAATCTTATCTTATTGCTCCTCATGAGTCACATTTTCAGTTAGTGCACCATATTCTGAAGGAGCATATCTTGCAAACACCTGATTATAAGGTTATTGTATTCTGTATAACTGGGATGGTGAAATGA 1548 0.4658 MWGWMVGEARRAACNWNWVSLRSMGGGPRTFPGGVNKWKWKRMHEKLARDKQNRLIQQEKQLYPARIRSHIRSSLSPDHRCRHSPPSLPQRPLQSPRRPLRQRRRRRPLEQPRRRVGAHKYRFWRKGSDDSSSGESEGEIEVELSMKKRGSSASLGEYDVKRERRVVPKTSPEFEFISYELNKRKLSQIEDQQSEQQQSNESILSNTRLKWLMQPQLCLQSLDECGISPLTVKALSSAGYVHMTRIREASLPICLEGMDAVVKAKTGTGKNVAFLVHPTSFIFNTLHSVFFFLIYDVERKQLPAIETVLKAMSSNTSQRVPPIYVLILCPTRELANQVAAVAKVLLKYHDAIRVQTLVGGIRFKVDQKRLESDPCQILVATPGRLLDHIENKSGISLRLMGLRTLVLDEADHLLDLGFRKDVEKIVDCLPRQQQSLLFSATIPKEVRCVSQLVLKREHKYVDTVGMGCVETPVKQSYLIAPHESHFQLVHHILKEHILQTPDYKVIVFCITGMVK 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02013 515 PANTHER RNA HELICASE 28 111 - -
Gma05g02013 515 MobiDBLite consensus disorder prediction 73 144 - -
Gma05g02013 515 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 251 460 IPR014001 -
Gma05g02013 515 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 33-RELATED 194 276 - -
Gma05g02013 515 PANTHER RNA HELICASE 194 276 - -
Gma05g02013 515 Gene3D - 205 462 IPR027417 -
Gma05g02013 515 SMART ultradead3 239 476 IPR014001 -
Gma05g02013 515 Pfam DEAD/DEAH box helicase 244 446 IPR011545 GO:0003676|GO:0005524
Gma05g02013 515 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 33-RELATED 302 514 - -
Gma05g02013 515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 216 455 IPR027417 -
Gma05g02013 515 MobiDBLite consensus disorder prediction 114 133 - -
Gma05g02013 515 PANTHER RNA HELICASE 302 514 - -
Gma05g02013 515 MobiDBLite consensus disorder prediction 97 113 - -
Gma05g02013 515 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 33-RELATED 28 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02013 Gma-Chr5 41459762 41462720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02013 227 451 Eukaryotic Initiation Factors Gene Family AT5G11200 27.391 5.91e-21 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02013 - - gmx:100781898 799.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02013 05 41459762 41462720 Gma05g02013 05 41459762 41462720 ECH
Gma05g02013 05 41459762 41462720 Gma08g00117 08 999645 1003801 GST