Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02000 ATGGACTGGAATTTGAAAGCACTTTCTTGGGATTTGAGTGAAGTGGATCAGGCAAACTTACCCAACATGGAAACAATGGAAGGCTCAAGCAGATATGGAATGTATAGAACTAAGGGGGAATTTTCTGTTGACTTGAAGCTTGGCCAGGTGGGGAATTCTGGCACAGAATCAGTGTTGACTAAGTCCAAAGATGCTGTTGGAGTCTCCAAAATGACATCCTCATCTACTTCAGGGTCATCTAAGAGAGCTCGTGCCCTTAGCAACGGGACACAAACAGTGTCATGCCTTGTGGATGGGTGCCACGCTGATCTCAGTAACTGCAGGGACTATCATAGGCGCCATAAGGTCTGTGAAGTCCATTCCAAGACTGCACAGGTCTCAATTGGAGGCCAGAAACAAAGGTTCTGCCAGCAGTGTAGCAGGTTCCATTCACTGGAGGAATTTGATGAGGGGAAAAGGAGCTGCAGGAAGCGGTTAGACGGGCACAACCGACGGAGAAGAAAGCCCCAACCAGAATCTCTAACGCGCTCTGGTAGTTTTTTGTCGAATTACCAAGGCACACAGTTGCTACCTTTCTCAAGTTCACATGAGTACCCATCCACAACTGTGGTGAATCCTACTTGGGGTGGAGTTCTTACAACTTCTGGTGATGTTAGGCTTCATGGGCACAACCAACACCACCACCAGGTGCATTTGGCTGATAAACAGGACCTTTTTCTTGGATCTTCTCCAGCCGGTTACAAAGAAGGGAAGCAATTGGCATTCATGCAAGGTGACCACACCCTCAACAACCGGAGCCCACATCTTCCAGGTGCTTCCGTGGGCCAGGCCCAGATGTTTCTTAGGACCAGCCTGTATTCAGAAAGCGATGGGCTGAGATGCAAAATGTTCTGTGATAGCCTAACAAGTTCGATCCAAGACAACAACACCTCTCGTGCTCTCTCTCTTCTGTCATCACCACCACAACCGCTCAGTCCTGGAAATGGATTAAACCTGATGGTGAACTCTCACTCGCCCCTTATGCAACCCTTGGGCCTGAGCCTGCATGATAACAGCCTGGGCTCCGTGGACCCTGTTTTGGGCCCCAATGATTCTTCATCAATGTATAACATAGGTTCTAATGGATCTCAGGGGAATGAGGCCCCTCCACTATTTCCCTTTCAATGGGAATAG 1173 0.4876 MDWNLKALSWDLSEVDQANLPNMETMEGSSRYGMYRTKGEFSVDLKLGQVGNSGTESVLTKSKDAVGVSKMTSSSTSGSSKRARALSNGTQTVSCLVDGCHADLSNCRDYHRRHKVCEVHSKTAQVSIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPESLTRSGSFLSNYQGTQLLPFSSSHEYPSTTVVNPTWGGVLTTSGDVRLHGHNQHHHQVHLADKQDLFLGSSPAGYKEGKQLAFMQGDHTLNNRSPHLPGASVGQAQMFLRTSLYSESDGLRCKMFCDSLTSSIQDNNTSRALSLLSSPPQPLSPGNGLNLMVNSHSPLMQPLGLSLHDNSLGSVDPVLGPNDSSSMYNIGSNGSQGNEAPPLFPFQWE 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02000 390 MobiDBLite consensus disorder prediction 159 179 - -
Gma05g02000 390 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 5 390 IPR044817 GO:0003677
Gma05g02000 390 Pfam SBP domain 95 168 IPR004333 GO:0003677
Gma05g02000 390 SUPERFAMILY SBT domain 93 174 IPR036893 GO:0003677|GO:0005634
Gma05g02000 390 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 5 390 - -
Gma05g02000 390 Gene3D - 86 156 IPR036893 GO:0003677|GO:0005634
Gma05g02000 390 ProSiteProfiles Zinc finger SBP-type profile. 92 169 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02000 Gma-Chr5 41376760 41379554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02000 1 390 SBP-box Gene Family AT5G50670 40.842 3.14e-76 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gma05g02000 SBP 1.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02000 - - gmx:100806507 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02000 05 41376760 41379554 Gma08g00108 08 946692 949230 GST
Gma05g02000 05 41376760 41379554 Gma04g01910 04 49364806 49376426 PCT
Gma05g02000 05 41376760 41379554 Gma06g01499 06 14455632 14460234 PCT
Gma04g01910 04 49364806 49376426 Gma05g02000 05 41376760 41379554 PCT
Gma06g01499 06 14455632 14460234 Gma05g02000 05 41376760 41379554 PCT