Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01982 ATGGATGATGGCCGCCAACACGAAAATGGCAGGCATAAGATGGAATACTATAGAGGAGCACATTCCCTGTGGAATACTGATTCCCAGCATCAAGTAAAAGAGCCGAATGCACTAGTTATGAATAAGAAGATTAGGTCCATTATGGCTGAAAGGCAGGCTGCCATTCTAGAAATTGAACTAGAGGCTGCTATATCTGAAAAGAATGAAGCCTTGGCTGCTCGAGATGCAGCCATTCGGCAGAGGGATGAAGCACTTGCTCAGAGGGATAATGCCCTTTTGGAACGAGATAATGCCCTCGCTGCCCTTCAGAGTCGGAATAATTCTGTCAACTTCCCATTTGGCGGTGGAATTCAATGTGGATCGAAACGGATGCACCATTCTTCTAACCATCTATCTAACATGACTGAAGCTGCATACAACACAAAGGATATGATAATAAGAGATGCCTCCCCAGTGACTGTTATACCTTCTGAAGCTGTCAATTCTCATCAATCAAAGAGATCAAAGGAGAACAAGGTAATTAATTCTAAGGCATCAAAGCCACCCTGCAAAGTAAAGAAAATGGGAGAGGATTTAAATAGGCAGGCTTCTTCTGAAGGGACAAAGATCAGATCTGAATGGGATAGGCAGGATGTTGGCGTGAATCTGGTTGCATTTGATGAAACTATCATGCTGGTCCCAGTTTGCACATGTACTGGTGTACCACGACAGTGCTACAAATGGGGGAATGGCGGATGGCAGTCATCTTGTTGTACCACAACATTGTCTATGTATCCGCTACCACAGCTTCCAAACAAGCGCCATGCCCGGATTGGAGGACGAAAGATGAGCGGAAGTGTCTTTACAAGACTTCTCATCCTTAAATTAATCTTTGATATATTATTTCTCCCCTATTATGATAAACCCTCTCCATCAAATTACTCCCAATCTTATTTTTCCTCCTCCCCTCTCTGCACCTCTGGCAAATCACCCCTCAACCACCTTGCCTACAATTCCCTTCTTTTCCTCTTCCCTCCAAACTCTACGCACCTCTCCCACTCCAACTTCCTCTTCCGACGTTGCCTCTTCAACTCTCCCGCCCTCATAACCTGCCTCAAACACATCTTTGCCACCTCTCCCTCGACGACGACGCCAAAGTTGGCCTCGTTGTCAAGGGCCTCCTCTCCTCCTCTCTATCACCCCCTCACCAGCCTCGTTGTCCTCCACATCAACAAGTTGTCATCGTGCTCTACGTCGTCTTCTCCTTCCCCAACAATTGTCGTAAAGCAAGGGAGTGCAGAGCTTGAGAGGAGTGTTGAGGTCATTAGGGTTTTGGCGAAGTGCAAGGAGGGGAGGGAGAAGATGGAACTATTTCGTGGTTGTGTGCAGATTCTGGCATGCGTGTTGAGGAATGAAAGCTCCAAGGGAGTTTAG 1413 0.4671 MDDGRQHENGRHKMEYYRGAHSLWNTDSQHQVKEPNALVMNKKIRSIMAERQAAILEIELEAAISEKNEALAARDAAIRQRDEALAQRDNALLERDNALAALQSRNNSVNFPFGGGIQCGSKRMHHSSNHLSNMTEAAYNTKDMIIRDASPVTVIPSEAVNSHQSKRSKENKVINSKASKPPCKVKKMGEDLNRQASSEGTKIRSEWDRQDVGVNLVAFDETIMLVPVCTCTGVPRQCYKWGNGGWQSSCCTTTLSMYPLPQLPNKRHARIGGRKMSGSVFTRLLILKLIFDILFLPYYDKPSPSNYSQSYFSSSPLCTSGKSPLNHLAYNSLLFLFPPNSTHLSHSNFLFRRCLFNSPALITCLKHIFATSPSTTTPKLASLSRASSPPLYHPLTSLVVLHINKLSSCSTSSSPSPTIVVKQGSAELERSVEVIRVLAKCKEGREKMELFRGCVQILACVLRNESSKGV 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01982 470 Coils Coil 53 73 - -
Gma05g01982 470 PANTHER - 1 285 IPR010409 -
Gma05g01982 470 MobiDBLite consensus disorder prediction 160 185 - -
Gma05g01982 470 Pfam GAGA binding protein-like family 1 285 IPR010409 -
Gma05g01982 470 PANTHER PROTEIN BASIC PENTACYSTEINE4 1 285 - -
Gma05g01982 470 SMART GAGA_bind_2 1 288 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01982 Gma-Chr5 41166868 41169524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01982 1 285 BBR or BPC Transcription factor family AT2G21240 55.052 3.12e-101 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Gma05g01982 GAGA_bind 3.8e-75 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01982 - - gmx:100813103 560.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01982 05 41166868 41169524 Gma08g00087 08 753799 754849 GST