Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01978 ATGGCTCCCTCCGACCAATCTCATCATTCTCTTGTCCCTGGATTCCTGTACTCATCAAAAACACTGTCCCATTTGAATAATAACACCAATCATGGGTTGCCACCATCATCCTCCATTGCATCATCATCATTGCCACAAGGTCGGACAAAGAgtcctatgatcctttcacccaaagagggaatccgcatgttttctcctgcttactatgctgcatgcagtgccggtggcatcttcagctgtggccttacccacatggctgtcactcctctcgatcttgtcaagtgcaacatgcagattgatcctgtaaagtacaagaacatcacatcaggatttggagtgttactgaaggagcagggcgctaaaggtttcttcaagggatgggttcctactctgctaggctacagtgctcaaggagcatgcaagtttgggttttatgagttcttcaagaagtactactcagaccttgcaggacccgagaatgcaatcaagtacaaaacgatcatatatctagctggttctgcttcggcagaagttattgctgatgttgccctttgccccatggaggctgtcaaagttcgtgtacaaactcagcctggctttgctcgaggtttgtcagatggattacccaagtttatcaaggctgatggtgtttctgggttgtataaagggcttgtccctctttggggccgtcaaattccatacacgatgatgaaatttgcttcctttgagactattgtggagaagatttacaaatatgcgatcccaacccccaaggagcagtgcagcaaaactaagcagcttggaGCCTACTACTGGAGGAAGTGCTCCTGCTCCTGTTAG 840 0.1048 MAPSDQSHHSLVPGFLYSSKTLSHLNNNTNHGLPPSSSIASSSLPQGRTKSPMILSPKEGIRMFSPAYYAACSAGGIFSCGLTHMAVTPLDLVKCNMQIDPVKYKNITSGFGVLLKEQGAKGFFKGWVPTLLGYSAQGACKFGFYEFFKKYYSDLAGPENAIKYKTIIYLAGSASAEVIADVALCPMEAVKVRVQTQPGFARGLSDGLPKFIKADGVSGLYKGLVPLWGRQIPYTMMKFASFETIVEKIYKYAIPTPKEQCSKTKQLGAYYWRKCSCSC 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01978 279 ProSiteProfiles Solute carrier (Solcar) repeat profile. 67 151 IPR018108 -
Gma05g01978 279 MobiDBLite consensus disorder prediction 27 50 - -
Gma05g01978 279 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 1 270 IPR044677 GO:0005315|GO:1990547
Gma05g01978 279 MobiDBLite consensus disorder prediction 27 51 - -
Gma05g01978 279 ProSiteProfiles Solute carrier (Solcar) repeat profile. 164 248 IPR018108 -
Gma05g01978 279 SUPERFAMILY Mitochondrial carrier 68 253 IPR023395 -
Gma05g01978 279 PANTHER PHOSPHATE CARRIER PROTEIN 1 270 - -
Gma05g01978 279 Pfam Mitochondrial carrier protein 70 153 IPR018108 -
Gma05g01978 279 Pfam Mitochondrial carrier protein 169 252 IPR018108 -
Gma05g01978 279 Gene3D Mitochondrial carrier domain 68 274 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01978 Gma-Chr5 41119701 41122577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01978 5 271 Chloroplast and Mitochondria Gene Families AT5G14040 70.251 3.43e-133 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01978 K15102 - gmx:100791467 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01978 05 41119701 41122577 Gma05g01978 05 41119701 41122577 ECH
Gma05g01978 05 41119701 41122577 Gma08g00083 08 711294 714284 GST