Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01974 ATGATGTCTGGTTGGATGCAAGACACAGCAGAAGAACAAAACTCTGCTTCTGCTTCATGGCCAAACTCAAACGCCAACAACGAATTAAGCTGCGTGTCATTGTGTGCTTACAAACCGATCTCCTCCCAGATCCATGAAGCAGAATGGCGGCACGTGCCCAACAACATAACACATACCAACGTTGCTGCTTCTGATAATTATAATCTGCTTCAACAACCATTGCACCCTACTAACCTCAACTTTCTCACTCCCAAGCCCACCTTTTACCCTTTGGAGATGAGTTCCGATGTGGGATTTCTTGACCCTCAAGCTTCCTTCACTTCGAAAACTGATGGTGATGTCTTCTTGAGCTCAAATAATAACCTTTTAACCCTTCCAAATATGAGCTCAAGCATGTGTGTGGTGTCCCCCCAACCCCAACAACAAGGAAGTGTTGTTGGATTTTCGGGTTTCAAGAATATTATGGGCTCTGATCATGATCACGTGGTGGAGGGTTCTAGAAAGGCCTTGCTTCTGAGCTGCAGGTCCAGCATACTCAGACCCCTTGAATCGTTGCCCCCATCAGGTTCACAGCCAACACTTTTTCAAAAGAGAGCAGCACTTAGGAAAAACTTGGCCGTGGCTGATGATAACTGCAAAGGCAAGAGTAGTGAAGTACTCATTGATAGTAAGAAGAGGAGAACGTGTAATAATGTTGGAGAAGGTGTTGAAGGTGGGAGTTTTGATGGGTCGGGGTTGAATAATTATGATTCTGATGAGATCAGTGATGACAACAATAAGATGGAAGAGATTAGTGCAAGGAACGGTGGAAACAGCTCAAAAGCCAATAGCACCGTCACCGGCAGCGGCGTGGATCAAAAGGGCAAGAAGAAGACAGGAATACCTGCAAAGAATTTGATGGCTGAACGCCGTCGAAGGAAGAAACTCAATGATAGACTCTACATGCTGAGATCCGTTGTTCCCAATATTAGCAAAATGGACAGGGCTTCAATCCTTGGGGATGCAATCGAGTATTTGAAGGAACTTCTGCAAAGGATCAGTGAGCTTCACAATGAATTGGAGTCAACACCAGCAGGTGGCTCTTCAAGCTTTCTTCATCATCCTTTGACACCCACTACTCTACCAGCCCGTATGCAAGAAGAACTTTGTCTCAGCTCGTTGCCAAGCCCTAATGGCCATCCTGCTAATGCTAGGGTTGAGGTTGGGtTGCGCGAAGGAAGAGGTGTAAACATCCACATGTTTTGCGACCGGAAACCCGGACTCTTGCTCTCTACCATGACGGCTCTCGACAACCTTGGACTAGACATTCAGCAGGCAGTTATCAGCTATGTCAATGGATTTGCTATGGATATTTTCAGAGCTGAGCAACGCAACGAAGGTCAGGATGTCCATCCGGAACAAATCAAAGCGGTTTTGTTGGATTCAGCTGCTGGCTTCCATAGCATGTCCTAA 1452 0.4621 MMSGWMQDTAEEQNSASASWPNSNANNELSCVSLCAYKPISSQIHEAEWRHVPNNITHTNVAASDNYNLLQQPLHPTNLNFLTPKPTFYPLEMSSDVGFLDPQASFTSKTDGDVFLSSNNNLLTLPNMSSSMCVVSPQPQQQGSVVGFSGFKNIMGSDHDHVVEGSRKALLLSCRSSILRPLESLPPSGSQPTLFQKRAALRKNLAVADDNCKGKSSEVLIDSKKRRTCNNVGEGVEGGSFDGSGLNNYDSDEISDDNNKMEEISARNGGNSSKANSTVTGSGVDQKGKKKTGIPAKNLMAERRRRKKLNDRLYMLRSVVPNISKMDRASILGDAIEYLKELLQRISELHNELESTPAGGSSSFLHHPLTPTTLPARMQEELCLSSLPSPNGHPANARVEVGLREGRGVNIHMFCDRKPGLLLSTMTALDNLGLDIQQAVISYVNGFAMDIFRAEQRNEGQDVHPEQIKAVLLDSAAGFHSMS 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01974 483 MobiDBLite consensus disorder prediction 266 290 - -
Gma05g01974 483 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 61 482 - -
Gma05g01974 483 Pfam Helix-loop-helix DNA-binding domain 300 342 IPR011598 GO:0046983
Gma05g01974 483 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 293 342 IPR011598 GO:0046983
Gma05g01974 483 Gene3D - 285 357 IPR036638 GO:0046983
Gma05g01974 483 MobiDBLite consensus disorder prediction 266 285 - -
Gma05g01974 483 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 297 362 IPR036638 GO:0046983
Gma05g01974 483 SMART finulus 299 348 IPR011598 GO:0046983
Gma05g01974 483 MobiDBLite consensus disorder prediction 1 22 - -
Gma05g01974 483 CDD bHLH_AtAMS_like 296 363 - -
Gma05g01974 483 PANTHER BHLH TRANSCRIPTIONAL FACTOR 61 482 - -
Gma05g01974 483 Coils Coil 336 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01974 Gma-Chr5 41080602 41084800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01974 91 455 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 49.598 6.90e-94 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma05g01974 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01974 - - gmx:100217334 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01974 05 41080602 41084800 Gma05g01974 05 41080602 41084800 ECH
Gma05g01974 05 41080602 41084800 Gma08g00077 08 667108 669536 GST
Gma05g01974 05 41080602 41084800 Gma04g01939 04 49804612 49808155 PCT
Gma05g01974 05 41080602 41084800 Gma06g01467 06 14025083 14028576 PCT
Gma04g01939 04 49804612 49808155 Gma05g01974 05 41080602 41084800 PCT
Gma06g01467 06 14025083 14028576 Gma05g01974 05 41080602 41084800 PCT