Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01973 ATGGCGACGTCGGAGGTATCCATCAAGGGAAATTCGGTGAACGGAAAAGGAGATAATAGTTCTGGTGGCTACACCAACGATGTTAGGAACGGTTCTGGTGGAGGCGAGCCTCGGAATTCTTCTTCTTCGTCTTCATCCGCGAGAGACGCGGAAGCTGCGCTTTACAGGGAGCTGTGGCACGCGTGTGCAGGTCCTCTGGTGACGGTGCCCAGAGAAGGAGAGCGCGTGTTCTACTTTCCTCAAGGACACATCGAGCAGGTTGAAGCGTCCACAAATCAGGTAGCGGAACAGCATATGCCGGTTTACGATCTACCACCCAAGATCCTTTGTCGGGTTATCAACGTCATGCTCAAGGCGGAGCCAGACACGGATGAGGTGTTTGCTCAAGTGACTTTACTTCCTGAGCCAAATCAAGATGAGAATGCGGTGGAGAAAGAGGGTCCTCCGGCGGCGCCTCCTCGGTTTCACGTGCATTCGTTTTGTAAAACGCTGACGGCGTCTGATACGAGCACTCACGGTGGGTTTTCGGTGCTGAGGCGACATGCCGATGAATGCCTCCCTCCGCTGGACATGACGAAGCAGCCACCTACCCAGGAGTTGGTGGCCAAGGATCTGCACGGCAACGAGTGGCGATTCAGGCATATTTTTCGGGgtcaaccgcgtagacacttgctgcaaagtggttggagtgtttttgttagctccaagaggctagttgctggggatgcgtttatatttttaaggggtgagaatggggaacttcgagttggtgttaggcgtgcaatgagacaacagggtaatgttccatcatcggttatctcaagccACAGTATGCATCTCGGTGTTCTTGCAACTGCTTGGCATGCCATATTGACTGGGACCATGTTCACTGTGTATTACAAGCCTAGGACTAGTCCAGCAGAGTTTATTGTTCCCTATGATCAATACATGGAGTCTCTCAAAAATAATTATACCATTGGCATGCGGTTCAAAATGAGGTTCGAAGGTGAAGAGGCTCCGGAGCAAAGGTTTACTGGTACCATTGTTGGAATTGAAGATGCTGATACCAAAAGGTGGCCAAAGTCCAAATGGAGAAGTCTTAAGGTTAGATGGGATGAAACATCAAACATACCACGTCCTGAGAGAGTTTCACAATGGAAGATAGAGCCTGCTCTTGCACCTCCTGCTCTGAATCCTCTACCAATGCCCAGGCCTAAAAGGCCTCGATCTAATGTGGTTCCATCATCCCCGGATTCCTCTGTTCTTACTCGTGAAGCTTCATCTAAAGTCAGCGTAGATCCTTTGCCAACAAGTGGGTTTCAAAGGGTCTTGCAAGGTCAAGAACTGTCGACCTTGAGAGGTAATTTTGCTGAAAGCAACGAATCTGATACGGTCGAGAAGTCTGCTGTGTGGCCACCTGTTGCAGATGATGAAAAGATTGATGTTTCTACCTCAAGAAGGTATGGGTCAGACAGCTGGATGTCAATGGGAAGGCATGAACTAACATATCCAGATCTGCTTTCAGGCTTTGGGACCCATGGAGATCATTCATCCCATCCATCCTTTGTTGATCAAAATGGTCCTGTAGCTAATGTTGGTAGAAAACATTTGTTGGATTGTGAAGGCAAACATAATGTTCTGAGTCCTTGGTCTGGAGTGCCATCTAGCCTGTCACTGAATCTTTTGGACTCAAATACAAAAGGCTCTGCTCAAGGTGGTGATACAACTTACCAAGTTCGAGGGAATTTGAGGTATAGTAGTGCATTTGGTGAGTACCCCATGCTTCATGGACATAAAGTTGAGCATTCACATGGAAACTTTTTGATGCCACCACCACCATCAACTCCATATGAGAGTCCTCGTTCAAGAGAACTGTTGCCCAAACCAATATCAGGGAAACCTTGTGAGGTTTCAAAACCGAAAGACAGTGACTGTAAGCTATTTGGCATCTCACTTCTTAGTAGCCCCATTGCACCAGAGCCTTCTGTATCACAAAGAAATGTCCCAAGTGAGCCAGTTGGTCACATGCATACAACATCACACCAACAGCGTGCATTTGACAACGATCAGAAGTCTGAGCATTCAAGGGGGGGATCAAAACCAGCTGATGGTCTGCTGATTGACGACCATGAAAAGGTGTTACAAACTTCTCAGACACATCTGAAAGATATTCAAGCAAAATCTCATAGTGGTTCTGCTAGAAGTTGCACTAAAGTTCACAAGAAGGGGATTGCGCTCGGTAGGTCAGTGGACCTCACAAAATTCAGTGATTATGGGGAATTAATTGCTGAATTAGATCAACTATTCGAATTTGGAGGTTTATTAACTTCTCCACAAAAGGATTGGCTTATTGTCTACACTGATAATGAGGGAGATATGATGCTTGTTGGTGATGATCCGTGGCAGGAATTTGTTGCAATGGTTCGCAAAATTTATATCTACCCCAAAGAGGAGATTCAGAAAATGAGCCCGGGTACCTTGAGTTCAAAGAATGAAGAGAATCAATCTGCTAGTGAAGGTGCCACAGACACACAAGAAATCAAGTGTCAGCTCAATAATTCAGCTTCAGATACCTGA 2577 0.4342 MATSEVSIKGNSVNGKGDNSSGGYTNDVRNGSGGGEPRNSSSSSSSARDAEAALYRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVAEQHMPVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEGPPAAPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADTKRWPKSKWRSLKVRWDETSNIPRPERVSQWKIEPALAPPALNPLPMPRPKRPRSNVVPSSPDSSVLTREASSKVSVDPLPTSGFQRVLQGQELSTLRGNFAESNESDTVEKSAVWPPVADDEKIDVSTSRRYGSDSWMSMGRHELTYPDLLSGFGTHGDHSSHPSFVDQNGPVANVGRKHLLDCEGKHNVLSPWSGVPSSLSLNLLDSNTKGSAQGGDTTYQVRGNLRYSSAFGEYPMLHGHKVEHSHGNFLMPPPPSTPYESPRSRELLPKPISGKPCEVSKPKDSDCKLFGISLLSSPIAPEPSVSQRNVPSEPVGHMHTTSHQQRAFDNDQKSEHSRGGSKPADGLLIDDHEKVLQTSQTHLKDIQAKSHSGSARSCTKVHKKGIALGRSVDLTKFSDYGELIAELDQLFEFGGLLTSPQKDWLIVYTDNEGDMMLVGDDPWQEFVAMVRKIYIYPKEEIQKMSPGTLSSKNEENQSASEGATDTQEIKCQLNNSASDT 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01973 858 Gene3D - 157 262 IPR015300 -
Gma05g01973 858 MobiDBLite consensus disorder prediction 394 410 - -
Gma05g01973 858 Gene3D - 323 393 - -
Gma05g01973 858 PANTHER AUXIN RESPONSE FACTOR 2 40 841 - -
Gma05g01973 858 SUPERFAMILY DNA-binding pseudobarrel domain 156 289 IPR015300 -
Gma05g01973 858 MobiDBLite consensus disorder prediction 412 434 - -
Gma05g01973 858 MobiDBLite consensus disorder prediction 1 48 - -
Gma05g01973 858 MobiDBLite consensus disorder prediction 682 704 - -
Gma05g01973 858 SUPERFAMILY CAD & PB1 domains 736 811 - -
Gma05g01973 858 Pfam AUX/IAA family 722 822 IPR033389 -
Gma05g01973 858 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 40 841 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gma05g01973 858 Gene3D - 730 823 - -
Gma05g01973 858 ProSiteProfiles B3 DNA-binding domain profile. 160 262 IPR003340 GO:0003677
Gma05g01973 858 CDD B3_DNA 158 260 IPR003340 GO:0003677
Gma05g01973 858 MobiDBLite consensus disorder prediction 603 638 - -
Gma05g01973 858 MobiDBLite consensus disorder prediction 657 681 - -
Gma05g01973 858 MobiDBLite consensus disorder prediction 656 704 - -
Gma05g01973 858 ProSiteProfiles PB1 domain profile. 734 816 IPR000270 GO:0005515
Gma05g01973 858 SMART B3_2 160 262 IPR003340 GO:0003677
Gma05g01973 858 MobiDBLite consensus disorder prediction 393 434 - -
Gma05g01973 858 Pfam Auxin response factor 286 368 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gma05g01973 858 MobiDBLite consensus disorder prediction 822 858 - -
Gma05g01973 858 Pfam B3 DNA binding domain 160 261 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01973 Gma-Chr5 41074783 41080023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01973 1 856 B3 DNA Binding Superfamily AT5G62000 64.310 0.0 1080
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gma05g01973 B3 2.7e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01973 - - gmx:100815956 1665.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01973 05 41074783 41080023 Gma05g01973 05 41074783 41080023 ECH
Gma05g01973 05 41074783 41080023 Gma08g00076 08 661000 666526 GST
Gma05g01973 05 41074783 41080023 Gma04g01940 04 49809549 49814099 PCT
Gma05g01973 05 41074783 41080023 Gma06g01466 06 14019250 14024198 PCT