Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01972 ATGCGTTTCACGAATCTCGATGACACTCCAATGTTCCGCCAACAGctcctgtgtttggAGGAAAATACTGAATCCTTGCGCGCGAGATGCTGCAAGTTCTACAAAGGATGTCGAAAGTATATGGAAGGTCTTCGAGAGTCATATAATGGGGACATTGCATTTGCAAGTGCCATAGAAAATTTTGGAGGAGGGCACAATGATCCTCATTTTGTTTCTTTGGGAGGACCTGTTATGGCCAAATTTACTATAGCGTTGAGAGAAATCAGTACTTACAAGGAACGGCTCCGGTTTCAAGTAGAGCACATTTTCAATGACCAGTTACTACCCATTGTCGATGTTGACATCCATGAAGTCAAGGAAGCTCGTAAGCGTTTTGATAAAGCTTCCCTTGTATATGACCAGGCACGTGAAAAGTTTATGTCACTGAAAAAAAGCACTAAGATTGACATTGCCACTGTCATAGAAGAGGAGTTGCAGGATGCAAGAGCATCATTTGAGGAAGCCCGTTTCAATCTGGTTGGCACTCTTAATAACATTGAGTTCAAGAAGAGATTTGAGGTTTTAAAGGCTGTAACTGGAATTATGGATGCTCATCTTCGATACTTTCAACAGGGGTATCAGCTATTACATCAGTTGGAACCTTTAATTAGTGAGATTATGGATTATGTAAAACAGTCAAAAGAAAGTTACAATCAGGAGCAGATTTCACTTTATGAAAGAATGCAAGACTACAAAAAACAAGTTTATGAAGAAAGTAGGTTGTCCTTGAATGGTCCTTATGGTTCTCCTAGTAGAGACTCTGCACCTCCGTTTTCTAGGATATCAAATGAAGTGGCAGATGTAGTGATGGAATCCGCTGCAAATGGAAAGGTTCAAATCATTCGACAAGGATATCTTTCTAAACGATCCTCCAATTTGAGAGGTGACTGGAAAAGAAGGTATTTTGTTGTTGACAGTCGAGGAATGTTGTACTACTATCGCAATCCATATGGCAGCAATCAACCATCTCCAAAGAGGAATAGTGGCACTGAAAATGGTTCTGGGCTTCTGAGTCGATGGCTTTCTTCTCATTACCATGGGGGTGTCCATGATGAAAGATCTGTAGCACGTCATACAGTAAGCCTGCTGACATCAACAATCAAGGTTGATGCTGACCAGTCGGATTTAAGATTCTGCTTCAGGATTATTTCGCCATCGAAGAACTATACGTTGCAGGCAGAAAATGCAGTGGATCAGATGGATTGGATGGAAAAGATAAATGGAGTAATTGCCTCCTTATTGAGTGTCCAGACACTGGGAATGCCTCTCTCAGCTGACTCAGAAAACGGCGACTCTTACTCTGATGACAATATTGATAAGTTAGAAAGCTCTCCAGATGATGATCACACTGTGACTGTGAAGTCTGCATCCAAGAATCCCACCCCTAAAAACCAGTTTCGTTCATCTAGAAGTTTGCAGTTGCATAAACACAGTATGAGAATTGAAAAACCAATTGATGTTCTTAGGAGGGTGAGTGGGAATGACAAATGTGCTGATTGTGGTAAACCTGAACCAGAATGGGCATCCTTAAACCTTGGCATCCTTATATGCATTGAGTGTTCTGGTGTTCATCGTAATCTTGGTGTACATATATCAAAAGTAAGATCACTGACACTTGATGTTAAAGTGTGGGATCCCTCTGTTTTAAGTATGCTTAAGTCACTGGGCAATCTTTTTGCAAACTCAGTTTGGGAGGAGCTGCTGTATCCACCGAGTAATTTGCAAACTGTTGACACCCCTGCGAGTTCATCCAAGGAAAATGGAGAGGAGTTCTTTCATGCAAGAAAACCAAAACATGACGATTCTATTTCATTAAAGGAAAGGTTCATTCATGCAAAGTATTCTGAGAAAATATTTATTCCCCGGACAAAGAAATATCACCCTCTCTTTTCACCCGCACAACTGGTGCTGGAAAGCATCTATGCCAATGATAAGAAAGCAGTCTACCAGCATATTATCAAGTCAGATTTTGACATCAATGCCATCGGTTGGCAAGCATCGTCTGATGACTCTTTCAACATGGTTTCTTCAAATAATTTAAACATTGCCTCTCAAAGTGAAATTCAGCCCATTGAGGCCATACAAGATGGTTCTAGCGTGCTTCACCTTGCATGCCTAACTAGTGACATTGGCATGGTGGAGCTGCTCCTACAACATGGGGCAAATATAAATGCTTGTGATTCTAGAGGTCAGACACCACTACATTATTGTATTATTAAAGGGAAGACCGCAGCTGCAAAAGTGCTTATCATGAGGGGAGCCAATACATATGTCGCAGATAAAGAAGGCAAAACTCCTGTTAAGCTTGCATCAGAATCTGGCTGTGGTGATGATGAAATTCTCGCTCTCTTGACAAGCAGATGA 2403 0.4099 MRFTNLDDTPMFRQQLLCLEENTESLRARCCKFYKGCRKYMEGLRESYNGDIAFASAIENFGGGHNDPHFVSLGGPVMAKFTIALREISTYKERLRFQVEHIFNDQLLPIVDVDIHEVKEARKRFDKASLVYDQAREKFMSLKKSTKIDIATVIEEELQDARASFEEARFNLVGTLNNIEFKKRFEVLKAVTGIMDAHLRYFQQGYQLLHQLEPLISEIMDYVKQSKESYNQEQISLYERMQDYKKQVYEESRLSLNGPYGSPSRDSAPPFSRISNEVADVVMESAANGKVQIIRQGYLSKRSSNLRGDWKRRYFVVDSRGMLYYYRNPYGSNQPSPKRNSGTENGSGLLSRWLSSHYHGGVHDERSVARHTVSLLTSTIKVDADQSDLRFCFRIISPSKNYTLQAENAVDQMDWMEKINGVIASLLSVQTLGMPLSADSENGDSYSDDNIDKLESSPDDDHTVTVKSASKNPTPKNQFRSSRSLQLHKHSMRIEKPIDVLRRVSGNDKCADCGKPEPEWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDPSVLSMLKSLGNLFANSVWEELLYPPSNLQTVDTPASSSKENGEEFFHARKPKHDDSISLKERFIHAKYSEKIFIPRTKKYHPLFSPAQLVLESIYANDKKAVYQHIIKSDFDINAIGWQASSDDSFNMVSSNNLNIASQSEIQPIEAIQDGSSVLHLACLTSDIGMVELLLQHGANINACDSRGQTPLHYCIIKGKTAAAKVLIMRGANTYVADKEGKTPVKLASESGCGDDEILALLTSR 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01972 800 ProSiteProfiles Ankyrin repeat profile. 709 741 IPR002110 GO:0005515
Gma05g01972 800 Gene3D - 285 432 IPR011993 -
Gma05g01972 800 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 1 800 - -
Gma05g01972 800 CDD BAR_SFC_plant 15 215 IPR035670 -
Gma05g01972 800 CDD PH_ACAP 295 428 - -
Gma05g01972 800 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Gma05g01972 800 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Gma05g01972 800 SMART arf_gap_3 495 640 IPR001164 GO:0005096
Gma05g01972 800 MobiDBLite consensus disorder prediction 467 484 - -
Gma05g01972 800 Pfam BAR domain of APPL family 6 233 - -
Gma05g01972 800 MobiDBLite consensus disorder prediction 438 484 - -
Gma05g01972 800 SMART ANK_2a 709 738 IPR002110 GO:0005515
Gma05g01972 800 SMART ANK_2a 742 771 IPR002110 GO:0005515
Gma05g01972 800 SMART 5bar 2 218 IPR004148 GO:0005515|GO:0005737
Gma05g01972 800 Pfam PH domain 294 423 IPR001849 -
Gma05g01972 800 Gene3D Arf GTPase activating protein 476 640 IPR038508 -
Gma05g01972 800 ProSiteProfiles ARF GTPase-activating proteins domain profile. 495 640 IPR001164 GO:0005096
Gma05g01972 800 Pfam Ankyrin repeats (many copies) 711 763 IPR002110 GO:0005515
Gma05g01972 800 CDD ArfGap 498 627 - -
Gma05g01972 800 Gene3D - 652 800 IPR036770 -
Gma05g01972 800 PANTHER CENTAURIN/ARF 1 800 IPR045258 GO:0005096
Gma05g01972 800 Coils Coil 118 138 - -
Gma05g01972 800 ProSiteProfiles Ankyrin repeat profile. 742 774 IPR002110 GO:0005515
Gma05g01972 800 SUPERFAMILY ArfGap/RecO-like zinc finger 494 634 IPR037278 -
Gma05g01972 800 ProSiteProfiles PH domain profile. 292 424 IPR001849 -
Gma05g01972 800 ProSiteProfiles Ankyrin repeat region circular profile. 742 774 - -
Gma05g01972 800 PRINTS HIV Rev interacting protein signature 507 526 IPR001164 GO:0005096
Gma05g01972 800 PRINTS HIV Rev interacting protein signature 526 543 IPR001164 GO:0005096
Gma05g01972 800 PRINTS HIV Rev interacting protein signature 549 570 IPR001164 GO:0005096
Gma05g01972 800 Pfam Putative GTPase activating protein for Arf 498 633 IPR001164 GO:0005096
Gma05g01972 800 MobiDBLite consensus disorder prediction 446 466 - -
Gma05g01972 800 ProSiteProfiles Ankyrin repeat region circular profile. 709 740 - -
Gma05g01972 800 SMART PH_update 293 426 IPR001849 -
Gma05g01972 800 SUPERFAMILY PH domain-like 203 423 - -
Gma05g01972 800 SUPERFAMILY Ankyrin repeat 659 788 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01972 Gma-Chr5 41040378 41054295 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01972 496 633 C2H2 Transcription Factor Family AT4G21160 41.379 6.89e-22 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01972 K12489 - gmx:100792517 1601.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01972 05 41040378 41054295 Gma05g01972 05 41040378 41054295 ECH
Gma05g01972 05 41040378 41054295 Gma04g01942 04 49847314 49854982 PCT
Gma05g01972 05 41040378 41054295 Gma06g01464 06 13982752 13990299 PCT
Gma04g01942 04 49847314 49854982 Gma05g01972 05 41040378 41054295 PCT
Gma06g01464 06 13982752 13990299 Gma05g01972 05 41040378 41054295 PCT