Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gma05g01972 | ATGCGTTTCACGAATCTCGATGACACTCCAATGTTCCGCCAACAGctcctgtgtttggAGGAAAATACTGAATCCTTGCGCGCGAGATGCTGCAAGTTCTACAAAGGATGTCGAAAGTATATGGAAGGTCTTCGAGAGTCATATAATGGGGACATTGCATTTGCAAGTGCCATAGAAAATTTTGGAGGAGGGCACAATGATCCTCATTTTGTTTCTTTGGGAGGACCTGTTATGGCCAAATTTACTATAGCGTTGAGAGAAATCAGTACTTACAAGGAACGGCTCCGGTTTCAAGTAGAGCACATTTTCAATGACCAGTTACTACCCATTGTCGATGTTGACATCCATGAAGTCAAGGAAGCTCGTAAGCGTTTTGATAAAGCTTCCCTTGTATATGACCAGGCACGTGAAAAGTTTATGTCACTGAAAAAAAGCACTAAGATTGACATTGCCACTGTCATAGAAGAGGAGTTGCAGGATGCAAGAGCATCATTTGAGGAAGCCCGTTTCAATCTGGTTGGCACTCTTAATAACATTGAGTTCAAGAAGAGATTTGAGGTTTTAAAGGCTGTAACTGGAATTATGGATGCTCATCTTCGATACTTTCAACAGGGGTATCAGCTATTACATCAGTTGGAACCTTTAATTAGTGAGATTATGGATTATGTAAAACAGTCAAAAGAAAGTTACAATCAGGAGCAGATTTCACTTTATGAAAGAATGCAAGACTACAAAAAACAAGTTTATGAAGAAAGTAGGTTGTCCTTGAATGGTCCTTATGGTTCTCCTAGTAGAGACTCTGCACCTCCGTTTTCTAGGATATCAAATGAAGTGGCAGATGTAGTGATGGAATCCGCTGCAAATGGAAAGGTTCAAATCATTCGACAAGGATATCTTTCTAAACGATCCTCCAATTTGAGAGGTGACTGGAAAAGAAGGTATTTTGTTGTTGACAGTCGAGGAATGTTGTACTACTATCGCAATCCATATGGCAGCAATCAACCATCTCCAAAGAGGAATAGTGGCACTGAAAATGGTTCTGGGCTTCTGAGTCGATGGCTTTCTTCTCATTACCATGGGGGTGTCCATGATGAAAGATCTGTAGCACGTCATACAGTAAGCCTGCTGACATCAACAATCAAGGTTGATGCTGACCAGTCGGATTTAAGATTCTGCTTCAGGATTATTTCGCCATCGAAGAACTATACGTTGCAGGCAGAAAATGCAGTGGATCAGATGGATTGGATGGAAAAGATAAATGGAGTAATTGCCTCCTTATTGAGTGTCCAGACACTGGGAATGCCTCTCTCAGCTGACTCAGAAAACGGCGACTCTTACTCTGATGACAATATTGATAAGTTAGAAAGCTCTCCAGATGATGATCACACTGTGACTGTGAAGTCTGCATCCAAGAATCCCACCCCTAAAAACCAGTTTCGTTCATCTAGAAGTTTGCAGTTGCATAAACACAGTATGAGAATTGAAAAACCAATTGATGTTCTTAGGAGGGTGAGTGGGAATGACAAATGTGCTGATTGTGGTAAACCTGAACCAGAATGGGCATCCTTAAACCTTGGCATCCTTATATGCATTGAGTGTTCTGGTGTTCATCGTAATCTTGGTGTACATATATCAAAAGTAAGATCACTGACACTTGATGTTAAAGTGTGGGATCCCTCTGTTTTAAGTATGCTTAAGTCACTGGGCAATCTTTTTGCAAACTCAGTTTGGGAGGAGCTGCTGTATCCACCGAGTAATTTGCAAACTGTTGACACCCCTGCGAGTTCATCCAAGGAAAATGGAGAGGAGTTCTTTCATGCAAGAAAACCAAAACATGACGATTCTATTTCATTAAAGGAAAGGTTCATTCATGCAAAGTATTCTGAGAAAATATTTATTCCCCGGACAAAGAAATATCACCCTCTCTTTTCACCCGCACAACTGGTGCTGGAAAGCATCTATGCCAATGATAAGAAAGCAGTCTACCAGCATATTATCAAGTCAGATTTTGACATCAATGCCATCGGTTGGCAAGCATCGTCTGATGACTCTTTCAACATGGTTTCTTCAAATAATTTAAACATTGCCTCTCAAAGTGAAATTCAGCCCATTGAGGCCATACAAGATGGTTCTAGCGTGCTTCACCTTGCATGCCTAACTAGTGACATTGGCATGGTGGAGCTGCTCCTACAACATGGGGCAAATATAAATGCTTGTGATTCTAGAGGTCAGACACCACTACATTATTGTATTATTAAAGGGAAGACCGCAGCTGCAAAAGTGCTTATCATGAGGGGAGCCAATACATATGTCGCAGATAAAGAAGGCAAAACTCCTGTTAAGCTTGCATCAGAATCTGGCTGTGGTGATGATGAAATTCTCGCTCTCTTGACAAGCAGATGA | 2403 | 0.4099 | MRFTNLDDTPMFRQQLLCLEENTESLRARCCKFYKGCRKYMEGLRESYNGDIAFASAIENFGGGHNDPHFVSLGGPVMAKFTIALREISTYKERLRFQVEHIFNDQLLPIVDVDIHEVKEARKRFDKASLVYDQAREKFMSLKKSTKIDIATVIEEELQDARASFEEARFNLVGTLNNIEFKKRFEVLKAVTGIMDAHLRYFQQGYQLLHQLEPLISEIMDYVKQSKESYNQEQISLYERMQDYKKQVYEESRLSLNGPYGSPSRDSAPPFSRISNEVADVVMESAANGKVQIIRQGYLSKRSSNLRGDWKRRYFVVDSRGMLYYYRNPYGSNQPSPKRNSGTENGSGLLSRWLSSHYHGGVHDERSVARHTVSLLTSTIKVDADQSDLRFCFRIISPSKNYTLQAENAVDQMDWMEKINGVIASLLSVQTLGMPLSADSENGDSYSDDNIDKLESSPDDDHTVTVKSASKNPTPKNQFRSSRSLQLHKHSMRIEKPIDVLRRVSGNDKCADCGKPEPEWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDPSVLSMLKSLGNLFANSVWEELLYPPSNLQTVDTPASSSKENGEEFFHARKPKHDDSISLKERFIHAKYSEKIFIPRTKKYHPLFSPAQLVLESIYANDKKAVYQHIIKSDFDINAIGWQASSDDSFNMVSSNNLNIASQSEIQPIEAIQDGSSVLHLACLTSDIGMVELLLQHGANINACDSRGQTPLHYCIIKGKTAAAKVLIMRGANTYVADKEGKTPVKLASESGCGDDEILALLTSR | 800 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gma05g01972 | 800 | ProSiteProfiles | Ankyrin repeat profile. | 709 | 741 | IPR002110 | GO:0005515 | |
Gma05g01972 | 800 | Gene3D | - | 285 | 432 | IPR011993 | - | |
Gma05g01972 | 800 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 | 1 | 800 | - | - | |
Gma05g01972 | 800 | CDD | BAR_SFC_plant | 15 | 215 | IPR035670 | - | |
Gma05g01972 | 800 | CDD | PH_ACAP | 295 | 428 | - | - | |
Gma05g01972 | 800 | Gene3D | Arfaptin homology (AH) domain/BAR domain | 4 | 250 | IPR027267 | - | |
Gma05g01972 | 800 | SUPERFAMILY | BAR/IMD domain-like | 6 | 315 | IPR027267 | - | |
Gma05g01972 | 800 | SMART | arf_gap_3 | 495 | 640 | IPR001164 | GO:0005096 | |
Gma05g01972 | 800 | MobiDBLite | consensus disorder prediction | 467 | 484 | - | - | |
Gma05g01972 | 800 | Pfam | BAR domain of APPL family | 6 | 233 | - | - | |
Gma05g01972 | 800 | MobiDBLite | consensus disorder prediction | 438 | 484 | - | - | |
Gma05g01972 | 800 | SMART | ANK_2a | 709 | 738 | IPR002110 | GO:0005515 | |
Gma05g01972 | 800 | SMART | ANK_2a | 742 | 771 | IPR002110 | GO:0005515 | |
Gma05g01972 | 800 | SMART | 5bar | 2 | 218 | IPR004148 | GO:0005515|GO:0005737 | |
Gma05g01972 | 800 | Pfam | PH domain | 294 | 423 | IPR001849 | - | |
Gma05g01972 | 800 | Gene3D | Arf GTPase activating protein | 476 | 640 | IPR038508 | - | |
Gma05g01972 | 800 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 495 | 640 | IPR001164 | GO:0005096 | |
Gma05g01972 | 800 | Pfam | Ankyrin repeats (many copies) | 711 | 763 | IPR002110 | GO:0005515 | |
Gma05g01972 | 800 | CDD | ArfGap | 498 | 627 | - | - | |
Gma05g01972 | 800 | Gene3D | - | 652 | 800 | IPR036770 | - | |
Gma05g01972 | 800 | PANTHER | CENTAURIN/ARF | 1 | 800 | IPR045258 | GO:0005096 | |
Gma05g01972 | 800 | Coils | Coil | 118 | 138 | - | - | |
Gma05g01972 | 800 | ProSiteProfiles | Ankyrin repeat profile. | 742 | 774 | IPR002110 | GO:0005515 | |
Gma05g01972 | 800 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 494 | 634 | IPR037278 | - | |
Gma05g01972 | 800 | ProSiteProfiles | PH domain profile. | 292 | 424 | IPR001849 | - | |
Gma05g01972 | 800 | ProSiteProfiles | Ankyrin repeat region circular profile. | 742 | 774 | - | - | |
Gma05g01972 | 800 | PRINTS | HIV Rev interacting protein signature | 507 | 526 | IPR001164 | GO:0005096 | |
Gma05g01972 | 800 | PRINTS | HIV Rev interacting protein signature | 526 | 543 | IPR001164 | GO:0005096 | |
Gma05g01972 | 800 | PRINTS | HIV Rev interacting protein signature | 549 | 570 | IPR001164 | GO:0005096 | |
Gma05g01972 | 800 | Pfam | Putative GTPase activating protein for Arf | 498 | 633 | IPR001164 | GO:0005096 | |
Gma05g01972 | 800 | MobiDBLite | consensus disorder prediction | 446 | 466 | - | - | |
Gma05g01972 | 800 | ProSiteProfiles | Ankyrin repeat region circular profile. | 709 | 740 | - | - | |
Gma05g01972 | 800 | SMART | PH_update | 293 | 426 | IPR001849 | - | |
Gma05g01972 | 800 | SUPERFAMILY | PH domain-like | 203 | 423 | - | - | |
Gma05g01972 | 800 | SUPERFAMILY | Ankyrin repeat | 659 | 788 | IPR036770 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gma05g01972 | Gma-Chr5 | 41040378 | 41054295 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gma05g01972 | 496 | 633 | C2H2 Transcription Factor Family | AT4G21160 | 41.379 | 6.89e-22 | 95.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gma05g01972 | K12489 | - | gmx:100792517 | 1601.26 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gma05g01972 | 05 | 41040378 | 41054295 | Gma05g01972 | 05 | 41040378 | 41054295 | ECH | |
Gma05g01972 | 05 | 41040378 | 41054295 | Gma04g01942 | 04 | 49847314 | 49854982 | PCT | |
Gma05g01972 | 05 | 41040378 | 41054295 | Gma06g01464 | 06 | 13982752 | 13990299 | PCT | |
Gma04g01942 | 04 | 49847314 | 49854982 | Gma05g01972 | 05 | 41040378 | 41054295 | PCT | |
Gma06g01464 | 06 | 13982752 | 13990299 | Gma05g01972 | 05 | 41040378 | 41054295 | PCT |