Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01968 ATGCCTTTTCAAATCATGGATCAGAGGGGGGTTTCTGCTTCATCCCACTTTTTTGATGACATTTCCTTTCGCTCTGAGAGGAATGTTGGATTGCAGAAACCAAAATCTATTAATGACCATTACCCACAAGGAAACAATGGAATGGTAGCATCACCTGGCAGCATTTTGAATGCTACACCACCCCTTGATGTAAATGCAAAAGTTGGCTTACTGGTGCCACAGGCTAGTCTACCTGAGGATAGTATACATTCCACGGAATCATCGAATTGCCGTCCCAAATCATTGTCTGATGCATGTCTGCAGTCAGCACCTACCTCTTATGGTTTAATTGGGAACAAGATTGTGACCAATGCTGCCCCTTGTGAAAGTAGTTTATTCTCAAGCTCCATGTCTGAGATATTTAGCCAAAAGTTAAGGTTATTCGGGAATGATGTTCGGTCTGATCATCTCATTAATGCTGATTCCCCTCCTGAGGAAGAACCATATAAATCTCTTGAAGAAATGGAGGCTGACACTATAGGGAATCTCCTTCCTGATGAAGATGATCTGTTTTCTGGTGTTGTTGATGAGTTAGGATGCAGTTCTCATGCCAGAACAAATGATGATTTTGAAGATTTTGATCTGTTTAGCAGTGGGGGAGGCATGGAGATGGAAGGAGATGAACATTTAAGTTCAGGAAAAAGAATAAGTGCTCTCGATGGAGATTTTGGTTTCTTTGGAGGTTATAAAGGAAAACTTCCTTTTGTTGAACAGCCTTCTAGAACACTTTTTGTTAGAAACATTAATAGCAATGTAGACGACTCTGAGCTAAAGGCTCTCTTTGAGCAATATGGAGATATCCGAACCATTTATACAGCCAGTAAGCATCGTGGGTTTGTCATGATTTCTTATCAAGATCTAAGGGCAGCACAAAATGCAATGCAAGAACTTCAAAATAGGCCATTGAGGTCTAGGAAACTTGATATACATTATTCAATTCCAAAGGTCAATGCTCCAGAAAAGGATATTGGCCATGGTACACTGATGCTATCTGGTCTTGATTCACCTGTTTTAGATGACGAGCTTAAACAAATTTTTGGATTTTATGGAGAAATTAAAGAAATCTATGAATATCCAGAAATGAATAATCACAAATTTATAGAGTTTTATGATGTCCGAGCTGCGGAGGCTGCTCTTCGTGCATTGAACAAGATTGACATTTCTGGGAAGCAGATCAAGCTTGaacctggccatcctagTTTGATGCACCAGTCTCGGAAGGGGCAAGAGGAGCGAGATCTTGGTCAAAGTATTATAGACAACTTATCATCAAGACAAAAAGCAACAGTGCCTTCTGGAGTAATTGGATCTGGTTGCTTTGAAAATGGATATAATCAGAGATTTCAATCTACAGTTAGGCAACCGCTGAATGCATTTATGGATAATGCATTCATTCATGTGAATTCTGGTATTCACAACACTGTGAGAGGGGCACCTGCTGGAAAAGTGTCCAGTGTTTGTGAGTCAAGTAGCTTTATTGATGCAATGAACTTTGCATCTGGTTCGAGATTTCATCCTCATTCCTTACCTGAGTATCGTGATAGTTTAGCTAATGGTAGTCCATATAACTTTTCTAGCTCCATTAGCAACATGGCTAACAATATAGGTGCTGGAGCAACAGAAGCCTCTGATGGCAGGCATATTCAGGGAATGGGCTCAACTGGGAACTTGGCAGAATTTAATGCAGGAGGAAATGGGATACGCCCACATCATGGACTTTATCATATGTGGAACAGCTCCAATTTGCAACAGCAAACTTCATCAAGTACCATGCTTTGGCAGAAATCACCATCATTTGTTAATGATGCTTCTTCTCCGGGCCTTCCACAGATGTCAAGCTTTGCTAGAACACCGCCTCATATGCTGAGAACACCACATATGATGGACCATCATGTTGGATCAGCACCAGTTGTTACAGCCTCACCATGGGAAAGGAAAAATTCTTACTTGGGAGGGTCCCCTGAGGCTTCTGGTTTTCGCTTGGGTTCTCTAGGAAGTGGAGGTTTTCATGGTTCCTGGCAAATGCATCCACTGGATTTTCCTTCTCATAACATGTTTTCTCATGTTGGTGGGAATGGCACCGAACTAACATCCAATGCTGGACAGAACTCTCCTAAGCAGTTATCTCATGTTTTCCCTGTGAGACATCCTATGTCTTCAATGTCAAAATTTGATGCTTCCAATGAACGTATGAGAAACCTTTATCACCGTAGAAATGAAGCAAACACCAACAATGTTGATAAAAAACTGTATGAGCTTGATTTAGGTCGCATATTGCGTGGGGAAGACAGCCGAACTACACTTATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTTGCTGCAATAGACGAGCAATGTAAGGGAACTTATGATTTTCTGTATTTACCGATTGATTTCAAGAATAAATGTAATGTTGGCTATGCATTCATAAACATGATTGATCCTGGTCAAATTATTCCTTTCCACCAGGCTTTTGATGGGAAAAAATGGGAGAAGTTTAATAGTGAAAAAGTAGCCTCACTTGCCTATGCCCGAATTCAAGGAAAAGCTTCTCTTATTGCTCATTTTCAGAACTCAAGCCTGATGAACGAAGACAAACGTTGCCGTCCTATTCTCTTCCATACAGATGGCCCAAATGCTGGTGATCCGGAGCCTTTTCCCATGGGTGCCAATATTAGACTGAGACCTGGAAAATCTCGCACTGCTGGCAATGAGGAGAATCGAAGCCAAGGGAGCCCTTCAACTTTGTCAAGTGGAGAAGACGCTAATGGGATAGACTCTTCAAAAAACACTTAA 2847 0.4078 MPFQIMDQRGVSASSHFFDDISFRSERNVGLQKPKSINDHYPQGNNGMVASPGSILNATPPLDVNAKVGLLVPQASLPEDSIHSTESSNCRPKSLSDACLQSAPTSYGLIGNKIVTNAAPCESSLFSSSMSEIFSQKLRLFGNDVRSDHLINADSPPEEEPYKSLEEMEADTIGNLLPDEDDLFSGVVDELGCSSHARTNDDFEDFDLFSSGGGMEMEGDEHLSSGKRISALDGDFGFFGGYKGKLPFVEQPSRTLFVRNINSNVDDSELKALFEQYGDIRTIYTASKHRGFVMISYQDLRAAQNAMQELQNRPLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSGLDSPVLDDELKQIFGFYGEIKEIYEYPEMNNHKFIEFYDVRAAEAALRALNKIDISGKQIKLEPGHPSLMHQSRKGQEERDLGQSIIDNLSSRQKATVPSGVIGSGCFENGYNQRFQSTVRQPLNAFMDNAFIHVNSGIHNTVRGAPAGKVSSVCESSSFIDAMNFASGSRFHPHSLPEYRDSLANGSPYNFSSSISNMANNIGAGATEASDGRHIQGMGSTGNLAEFNAGGNGIRPHHGLYHMWNSSNLQQQTSSSTMLWQKSPSFVNDASSPGLPQMSSFARTPPHMLRTPHMMDHHVGSAPVVTASPWERKNSYLGGSPEASGFRLGSLGSGGFHGSWQMHPLDFPSHNMFSHVGGNGTELTSNAGQNSPKQLSHVFPVRHPMSSMSKFDASNERMRNLYHRRNEANTNNVDKKLYELDLGRILRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCKGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHQAFDGKKWEKFNSEKVASLAYARIQGKASLIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGANIRLRPGKSRTAGNEENRSQGSPSTLSSGEDANGIDSSKNT 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01968 948 Pfam RNA recognition motif 2 778 874 IPR007201 -
Gma05g01968 948 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 254 327 IPR000504 GO:0003723
Gma05g01968 948 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 942 - -
Gma05g01968 948 SMART rrm1_1 255 323 IPR000504 GO:0003723
Gma05g01968 948 SMART rrm1_1 340 408 IPR000504 GO:0003723
Gma05g01968 948 SMART rrm1_1 780 856 IPR000504 GO:0003723
Gma05g01968 948 MobiDBLite consensus disorder prediction 889 948 - -
Gma05g01968 948 CDD RRM1_MEI2_like 253 328 IPR034453 -
Gma05g01968 948 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 942 - -
Gma05g01968 948 SUPERFAMILY RNA-binding domain, RBD 251 410 IPR035979 GO:0003676
Gma05g01968 948 Gene3D - 248 337 IPR012677 -
Gma05g01968 948 Gene3D - 338 433 IPR012677 -
Gma05g01968 948 CDD RRM3_MEI2_like 781 866 IPR034454 -
Gma05g01968 948 Coils Coil 293 313 - -
Gma05g01968 948 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 339 412 IPR000504 GO:0003723
Gma05g01968 948 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 256 320 IPR000504 GO:0003723
Gma05g01968 948 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 341 406 IPR000504 GO:0003723
Gma05g01968 948 SUPERFAMILY RNA-binding domain, RBD 780 865 IPR035979 GO:0003676
Gma05g01968 948 MobiDBLite consensus disorder prediction 920 948 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01968 Gma-Chr5 41001043 41012195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01968 251 405 Eukaryotic Initiation Factors Gene Family AT3G16380 25.000 5.26e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01968 - - gmx:106798747 1887.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01968 05 41001043 41012195 Gma05g01968 05 41001043 41012195 ECH