Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01947 ATGGCGGCGAAATCTAGTTCGAGTTCGACAACAAACGTGGTGACTCTGaaggcggcgtgggttctcccgcagcgcacgcagaacatccgtgaggtgtacgaggtggggcggaagttggggcagggtcaattcgggactaccttcgagtgcacgcgccgcgcgtccggggggaaattcgcgtgcaagtcaattcccaagcggaagctgctgtgcaaggaggactacgaggacgtgtggcgggagattcagataatgcaccacttgtcggagcacgcgcacgttgtccgcatcgaagggacgtacgaggattcctcggcggtgcacctcgtcatggagttgtgtgagggtggggagttgtttgacaggatcgtgcagaagggacactacagcgagagacaggcggcgaggttgataaagacgattgttgaggttgttgaagcgtgtcactcgcttggggtcatgcatagggacctcaagcctgagaacttcctctttgatactgttgatgaggatgctaagcttaaggccactgatttcggcttgtctgttttttacaagcctgGTGAATCCTTTTGTGATGTTGTCGGGAGCCCATACTATGTTGCACCAGAGGTCTTGCGCAAGCACTATGGACCTGAATCAGACGTGTGGAGTGCTGGGGTTATTCTGTACATCTTATTAAGTGGGGTGCCACCATTTTGGGCTGAATCTGAACCAGGGATCTTCCGACAGATTTTACTAGGAAAACTTGATTTTCAATCTGAGCCTTGGCCTAGCGTTTCAGACAGTGCCAAGGATCTAATTCGGAAAATGCTTGATCAAAATCCAAAAACAAGGCTTACAGCACATGAAGTACTCCgccacccatggattgttgatgacaacattgcacctgataaacctcttgattctgcagttttatcacgtctgaaacaattctctgcaatgaataaattgaaaaagatggcATTGCGTGTTATTGCGGAGAGGCTATCTGAAGAAGAAATTGGTGGCCTGAAAGAGTTATTCAAGATGATTGACACAGACAACAGTGGAACGATAACGTTTGATGAGTTAAAAGATGGCTTGAAGCGAGTAGGATCTGAACTTATGGAGTCTGAAATCAAGGATCTTATGGATGCTGCGGATATTGATAAAAGTGGGACAATTGATTATGGTGAATTCATTGCTGCCACTGTTCATTTAAATAAGCTGGAGAGAGAGGAAAACCTAGTGTCAGCCTTCTCGTATTTTGACAAAGATGGCAGTGGTTACATAACCCTTGATGAGATACAACAAGCCTGTAAGGACTTTGGTTTAGATGATGTCCATATTGATGACATGATCAAGGAAATTGATCAAGATAACGATGGGCAAATAGATTATGGGGAATTTGCTGCCATGATGAGAAAGGGCAATGGAGGAATTGGAAGGCGAACTATGAGAAAAACACTAAATTTAAGAGATGCTCTTGGATTAGTAGACAATGGGTCCAATCAAGTTATTGAGGGCTACTTTAAGTAA 1524 0.2467 MAAKSSSSSTTNVVTLKAAWVLPQRTQNIREVYEVGRKLGQGQFGTTFECTRRASGGKFACKSIPKRKLLCKEDYEDVWREIQIMHHLSEHAHVVRIEGTYEDSSAVHLVMELCEGGELFDRIVQKGHYSERQAARLIKTIVEVVEACHSLGVMHRDLKPENFLFDTVDEDAKLKATDFGLSVFYKPGESFCDVVGSPYYVAPEVLRKHYGPESDVWSAGVILYILLSGVPPFWAESEPGIFRQILLGKLDFQSEPWPSVSDSAKDLIRKMLDQNPKTRLTAHEVLRHPWIVDDNIAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAATVHLNKLEREENLVSAFSYFDKDGSGYITLDEIQQACKDFGLDDVHIDDMIKEIDQDNDGQIDYGEFAAMMRKGNGGIGRRTMRKTLNLRDALGLVDNGSNQVIEGYFK 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01947 507 ProSitePatterns Protein kinases ATP-binding region signature. 39 62 IPR017441 GO:0005524
Gma05g01947 507 ProSiteProfiles EF-hand calcium-binding domain profile. 334 369 IPR002048 GO:0005509
Gma05g01947 507 ProSitePatterns EF-hand calcium-binding domain. 383 395 IPR018247 -
Gma05g01947 507 ProSitePatterns Serine/Threonine protein kinases active-site signature. 153 165 IPR008271 GO:0004672|GO:0006468
Gma05g01947 507 ProSitePatterns EF-hand calcium-binding domain. 453 465 IPR018247 -
Gma05g01947 507 CDD EFh 339 398 IPR002048 GO:0005509
Gma05g01947 507 ProSiteProfiles EF-hand calcium-binding domain profile. 444 475 IPR002048 GO:0005509
Gma05g01947 507 PANTHER SERINE/THREONINE-PROTEIN KINASE 18 483 - -
Gma05g01947 507 Pfam Protein kinase domain 33 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g01947 507 ProSiteProfiles EF-hand calcium-binding domain profile. 370 405 IPR002048 GO:0005509
Gma05g01947 507 SMART serkin_6 33 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g01947 507 Gene3D Phosphorylase Kinase; domain 1 35 119 - -
Gma05g01947 507 ProSitePatterns EF-hand calcium-binding domain. 347 359 IPR018247 -
Gma05g01947 507 SUPERFAMILY Protein kinase-like (PK-like) 8 314 IPR011009 -
Gma05g01947 507 Gene3D Transferase(Phosphotransferase) domain 1 120 331 - -
Gma05g01947 507 SMART efh_1 444 472 IPR002048 GO:0005509
Gma05g01947 507 SMART efh_1 410 438 IPR002048 GO:0005509
Gma05g01947 507 SMART efh_1 338 366 IPR002048 GO:0005509
Gma05g01947 507 SMART efh_1 374 402 IPR002048 GO:0005509
Gma05g01947 507 CDD STKc_CAMK 32 290 - -
Gma05g01947 507 ProSiteProfiles Protein kinase domain profile. 33 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g01947 507 Gene3D - 404 507 - -
Gma05g01947 507 Pfam EF-hand domain pair 339 399 IPR002048 GO:0005509
Gma05g01947 507 Pfam EF-hand domain pair 409 470 IPR002048 GO:0005509
Gma05g01947 507 Gene3D - 332 403 - -
Gma05g01947 507 PANTHER BNAA09G05220D PROTEIN 18 483 - -
Gma05g01947 507 SUPERFAMILY EF-hand 330 471 IPR011992 -
Gma05g01947 507 ProSitePatterns EF-hand calcium-binding domain. 419 431 IPR018247 -
Gma05g01947 507 ProSiteProfiles EF-hand calcium-binding domain profile. 406 441 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01947 Gma-Chr5 40859618 40865250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01947 21 499 EF-hand Containing Proteins AT4G09570 77.178 0.0 775
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gma05g01947 Pkinase 1.2e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01947 K13412 - gmx:100806678 1009.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01947 05 40859618 40865250 Gma05g01947 05 40859618 40865250 ECH
Gma05g01947 05 40859618 40865250 Gma08g00052 08 458181 462206 GST