Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01940 ATGGATAAGTATGAGGCTGTCAAGGATTTGGGAGCTGGGAATTTTGGGGTGGCTAGGCTCATGAGGAACAAGGAGACCAAGGAGCTTGTTGCCATGAAATACATCGAGCGTGGCCAAAAGATTGATGAGAATGTGGCAAGAGAGATTATCAACCACAGATCCCTTCGGCACCCCAATATAATTCGCTTCAAGGAGGCAAGGACCTTATTTGTGGTTTTGACCCCCACCCATTTAGCCATAGTGATGGAGTATGCGGCTGGAGGAGAGCTCTTTGAGAGGATATGCAATGCTGGAAGGTTCAGTGAAGATGAGGCTAGATATTTCTTTCAGCAGCTGATTTCTGGTGTACATTACTGTCATGCCATGCAAATATGTCACAGAGATTTGAAGCTAGAAAATACCCTTTTAGATGGAAGTCCTGCACCCCGTCTGAAAATTTGTGACTTTGGTTATTCCAAGTCATCATTGCTTCATTCTCGACCAAAATCAACTGTTGGAACTCCAGCTTATATAGCACCAGAGGTTCTTTCCAGGAGGGAGTATGATGGCAAGTTGGCTGATGTATGGTCATGTGGAGTGACTCTTTATGTCATGCTGGTTGGAGCTTACCCCTTTGAGGATCAGGATGACCCTAGGAATTTTAGGAAAACAATTCAGCGTATAATGGCTGTTCAATACAAAATCCCTGATTATGTTCACATATCTCAAGACTGCAGACACCTCCTTTCTCGTATATTTGTAGCAAATCCATTAAGGAGAATATCTCTTAAGGAAATTAAGAACCACCCATGGTTTTTAAAGAATCTTCCAAGAGAGCTAACAGAATCAGCTCAAGCTGTCTATTACCAGAGAGGCAATCCAAGCTTTTCTGTTCAAAGTGTGGAGGAGATCATGAAAATTGTGGGAGAGGCAAGGGACCCTCCTCCAGTATCTAGGCTTGTCAAAGGTTTTGGCTGGGAGGGCAAAGAAGATGAAGGGGAAGAAGACGTGGAGGAAGAGGAGGATGAAGAAGACGAGTATGACAAGAGGGTCAAAGAGTTTTGTGGGAATTTGTAA 1056 0.4375 MDKYEAVKDLGAGNFGVARLMRNKETKELVAMKYIERGQKIDENVAREIINHRSLRHPNIIRFKEARTLFVVLTPTHLAIVMEYAAGGELFERICNAGRFSEDEARYFFQQLISGVHYCHAMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQDDPRNFRKTIQRIMAVQYKIPDYVHISQDCRHLLSRIFVANPLRRISLKEIKNHPWFLKNLPRELTESAQAVYYQRGNPSFSVQSVEEIMKIVGEARDPPPVSRLVKGFGWEGKEDEGEEDVEEEEDEEDEYDKRVKEFCGNL 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01940 351 MobiDBLite consensus disorder prediction 323 340 - -
Gma05g01940 351 ProSiteProfiles Protein kinase domain profile. 4 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g01940 351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Gma05g01940 351 Coils Coil 323 343 - -
Gma05g01940 351 PANTHER SERINE/THREONINE KINASE 2 348 - -
Gma05g01940 351 MobiDBLite consensus disorder prediction 315 342 - -
Gma05g01940 351 Gene3D Phosphorylase Kinase; domain 1 1 84 - -
Gma05g01940 351 SMART serkin_6 4 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g01940 351 SUPERFAMILY Protein kinase-like (PK-like) 1 295 IPR011009 -
Gma05g01940 351 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2H 2 348 - -
Gma05g01940 351 Pfam Protein kinase domain 4 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g01940 351 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Gma05g01940 351 Gene3D Transferase(Phosphotransferase) domain 1 85 273 - -
Gma05g01940 351 CDD STKc_SnRK2 3 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01940 Gma-Chr5 40791944 40799226 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01940 3 268 CBL-interacting serine-threonine protein kinases AT4G24400 41.818 1.53e-64 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Gma05g01940 Pkinase 2.7e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01940 K14498 - gmx:100804018 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01940 05 40791944 40799226 Gma05g01940 05 40791944 40799226 ECH
Gma05g01940 05 40791944 40799226 Gma08g00048 08 397455 412835 GST
Gma05g01940 05 40791944 40799226 Gma04g01987 04 50320767 50324390 PCT
Gma05g01940 05 40791944 40799226 Gma06g01426 06 13552148 13554845 PCT
Gma04g01987 04 50320767 50324390 Gma05g01940 05 40791944 40799226 PCT
Gma06g01426 06 13552148 13554845 Gma05g01940 05 40791944 40799226 PCT