Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01936 ATGCCACTTTTAAGGAGAAAACCTTTTTCCTTGGCCGAGCCTCCTGAGGATTTGAAGCCAGATGAGCCTGTTTACCAAATTCGATTTACAAAAGAAATCTTTCAAGATTATCATGATTATTTGAAGCGATTGAATCTATACCGCCAGAGGGTTTGGATGTGTAAAGTCACTGGAAAAACTGGCTTGACATATGAAGAGGCTTTGGTGTCTGAACAACTTGCTACCGAGAAAGTTCAACAGTTTCCTAAAGAATTAATGACTATTGCTTTAAGGATTATTCAATACAGTATGCTCCCTTTGAAGGATCTTGCTGATTCTATTGGTGAGAAATTGCAGGAACAGTTGTTTGTGGGTGCTGAACTACATTGGAAAAAGGATGATGGAGTTCATCCATGCAAAATATTAAAAGTCATTCAGAAAGGAGTTGACACAGTCTCTTATGAGGTAGCTTGGCTTGACAAAAACAAGAATATAAGAGAACAAGCAGAAGTCAGTGCAGAAGATTTGGTGCATAAGAAGCCGCTTTTTAGTAGAAATATTTTGAAGTCTTTTATTCGTGAGTCTACATATCGGAATGCCCCTTGGGTTTTACATGATGAACTGGCTAAAAATCATGGAATATCAACTGACATTCCTGAAGAGTTAAGAGGAAGGGTTTTTTACAAAGATGGACTTTTAGTTTGCTCCAAGAAAAGGAAACACGAGGAATCACGGGAGGACACCGATACCTGTAAAAAGAAGTTGGATGGTGCACAAGTCGATGATTCTGTCCAAGAGAAAGAAAATGGTCAACCCAAGGATGCAGCAATCAAATACCCCATTGATGATCTATTGGTGATCCCTAGTCCAGATGATCCTGTTTTCACTGATCGTCCTTCTCCAGCAAAAAGCTTCAATATTCCAATGAGTTGTGTAGGGGAACTCTTGATGGTTTGGGATTTTCTTAGTTCCTTTGGTAGACTGTTGCAGCTGAGCCCCTACTCTCTAGAAGATTTTGAAATTGCAATCTGTCATAAGGATAGCAATGTGGCTCTCCTTGTGGAATCTCATGCAGCACTTTTTCGACTTCTCATCAAAGATGACGATGAATACTCTTTGGCTGTGAAGAATCGAAAATTGAAGTCTAAGATTACAACAAATAATTGGACAGAATATTTATGTCATTTTCTAGAGATGATCAATATTCCTGAACTATGGCAACATAAAACAACTATAAAACGGGGACATTATGGCCTTGTAGATGCCAGTGCTAAATTAAGAATCTTAGGCGAATTGGTCAATCGGGCCCTTGAAACTGCAATTTTCAGGGGAAAGTTAGATGAGATTATTGAACAGCGACAGGCACTTGGGGCCACTAGAAGGGGAGAAGCTTTGGAAAATGGTAGAAGGAGAAGAGAAGAAAAGGAGCGGTTGAAAGCTGAGTTGGAAAGCAATGGATTTGTGGATGGGTATCATCTGAACGGTGAAAATGTCCTAGCAAACAATAGTATACAAAATGGAGATGTGGGAGAGAAAAGAATTATAGAGATAGAACCATCTGGGCAAAATGATCCATTGGGCAGAAGTGGGATCAAGCATTTAAATTCTGCTCCAAAAAAGACACTTAAGAAGTTAAATTCAGAGCTGAAAGAACCAACGGAAAATGGAAAAGAATTATCCAGAAAGGAATCACCAAAACAGTTGAAGGCTGATAAGGATTCATCAGAGAAGAATAGTGACGAACAGAGGAAAGAATATTTCGAACGGGAGATGGAGAAGCGATTTATTCGTAGGAGCCCATTAGGTAAGGACAGAGATTACAATAATTATTGGTGGTTCTGTCGTTATGGGAGGATATTTGTTGAAAGCTGTGACTCCAAGAAGTGGGGATACTACAGCAGTAAGGAAGAGCTTGATGCATTGATGAGTTCACTGAATTGCAAGGGTGAGCGGGAAAGGGCACTGCGAAAGCAGCTAGAAAAATATTATAGTACAATATGCTCAGAACTCCAGAAAACATCTAAGGATTTGATGCACAGGTTTGTAGATGAGTCTGTTCTTCGTAGGTCTACTCGTGTTAGAGCTCAACCAGGGCAGAACCCCTCCGATGCTTGCCTCAGATATAAAAACAAGTACCATAAAGAAGAATAG 2130 0.3977 MPLLRRKPFSLAEPPEDLKPDEPVYQIRFTKEIFQDYHDYLKRLNLYRQRVWMCKVTGKTGLTYEEALVSEQLATEKVQQFPKELMTIALRIIQYSMLPLKDLADSIGEKLQEQLFVGAELHWKKDDGVHPCKILKVIQKGVDTVSYEVAWLDKNKNIREQAEVSAEDLVHKKPLFSRNILKSFIRESTYRNAPWVLHDELAKNHGISTDIPEELRGRVFYKDGLLVCSKKRKHEESREDTDTCKKKLDGAQVDDSVQEKENGQPKDAAIKYPIDDLLVIPSPDDPVFTDRPSPAKSFNIPMSCVGELLMVWDFLSSFGRLLQLSPYSLEDFEIAICHKDSNVALLVESHAALFRLLIKDDDEYSLAVKNRKLKSKITTNNWTEYLCHFLEMINIPELWQHKTTIKRGHYGLVDASAKLRILGELVNRALETAIFRGKLDEIIEQRQALGATRRGEALENGRRRREEKERLKAELESNGFVDGYHLNGENVLANNSIQNGDVGEKRIIEIEPSGQNDPLGRSGIKHLNSAPKKTLKKLNSELKEPTENGKELSRKESPKQLKADKDSSEKNSDEQRKEYFEREMEKRFIRRSPLGKDRDYNNYWWFCRYGRIFVESCDSKKWGYYSSKEELDALMSSLNCKGERERALRKQLEKYYSTICSELQKTSKDLMHRFVDESVLRRSTRVRAQPGQNPSDACLRYKNKYHKEE 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01936 709 MobiDBLite consensus disorder prediction 512 577 - -
Gma05g01936 709 ProSiteProfiles WAC domain profile. 22 127 IPR013136 -
Gma05g01936 709 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 589 655 IPR028941 -
Gma05g01936 709 Coils Coil 458 478 - -
Gma05g01936 709 MobiDBLite consensus disorder prediction 536 577 - -
Gma05g01936 709 Pfam DDT domain 303 360 IPR018501 -
Gma05g01936 709 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 707 - -
Gma05g01936 709 SMART testlast3 302 363 IPR018501 -
Gma05g01936 709 ProSiteProfiles DDT domain profile. 302 363 IPR018501 -
Gma05g01936 709 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 120 IPR013136 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01936 Gma-Chr5 40762545 40767871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01936 575 665 Homeobox Transcription Factor Family AT5G44180 36.000 6.36e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Gma05g01936 WAC_Acf1_DNA_bd 3.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01936 - - gmx:100801902 1420.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01936 05 40762545 40767871 Gma05g01936 05 40762545 40767871 ECH
Gma05g01936 05 40762545 40767871 Gma08g00045 08 378070 382468 GST
Gma05g01936 05 40762545 40767871 Gma06g01422 06 13513126 13519137 PCT
Gma06g01422 06 13513126 13519137 Gma05g01936 05 40762545 40767871 PCT