Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01927 ATGTTTCGCCAAAATTTTAGTAGGGGTCCTCTCAAAATATTGACGAGGTGGCTCATATTCCTTACTATCTTGCAAGTTGGTTGTGCTATCAAAGATCCTGATGTAGAAGGTGAAGCTCTGCTTGATGTTTTGCATTTCCTCAATGATTCCAATAAGCAAATAACGGACTGGGACAGTTTTTTAGTGAGCCCGTGCTTCAGTTGGTCTCATGTCACTTGTAGAAACGGGCATGTCATATCCCTGGCCTTGGCTTCAGTTGGATTTTCTGGAACACTTTCTCCCTCAATTACCAAATTGAAGTATTTGTCTAGCTTGGAATTACAGAACAACAATCTTTCAGGACCCTTGCCTGATTACATTTCCAACTTGACAGAGCTTCAATATCTAAATCTTGCTGACAATAGTTTTAATGGTTCTATACCAGCTAAATGGGGTGAACTACCGAATCTAAAGCATCTGGATCTTTCATCTAATGGTCTTACTGGAAGTATCCCAATGCAACTCTTTTCAGTTCCATTGTTTAACTTTTCAGATACGCACCTCCAGTGTGGCCCTGGCTTTGAGCAGCCTTGCGCTTCTAAATCTGAAAATCCAGCTTCAGCCCACAAATCAAAATTGGCAAAAATTGTACGTTATGCAAGTTGTGGTGCATTTGCACTTCTGTGTCTTGGGGCTATCTTTACGTATCGACACCATCGAAAGCACTGGCGAAAAAGTGATGATGTCTTTGTTgatgtttcagGTGAAGACGAGAGTAAAATTTTTTTCGGGCAATTGAGAAGATTTTCTTGGCGTGAACTCCAACTTGCCACTAAAAATTTCAGTGAAGGCAATGTAATTGGTCAGGGTGGCTTTGGAAAAGTGTACAAAGGAGTACTCTCTGATAACACAAAAGTCGCTGTGAAACGCCTCATTGATTATCACAATCCTGGTGGAGAGGCTGCATTCGAGAGAGAAGTTCAACTAATAAGTGTTGCAGTTCATAGAAACCTCCTAAGACTAATTGGATTCTGCACAACCACAACTGAAAGAATCCTTGTGTACCCTTTCATGGAAAATCTAAGTGTAGCATATCGACTGAGAGATTTAAAACCTGGTGAGAAAGGCTTGGACTGGCCAACAAGGAAACGCGTGGCTTTTGGCACTGCCCATggtttggagtatctacatgagcaatgcaatcctaagataatacatcgtgatctaaaggctgcaaatatcctactagatgatgaatttgaagctgttttaggtgattttgggctagccaaGCTGGTCGATGCAAGGATGACTCATGTTACCACTCAAGTGAGGGGCACAATGGGTCACATTGCCCCTGAGTATTTGTCCACCGGAAAATCTTCAGAGAAGACTGATGTTTTTGGATATGGCATAACACTTCTTGAACTAGTCACCGGTGAGCGTGCAATAGACCTCTCTCGGCTTGAAGAGGACGAGGATGTTCTTCTGATTGATTATGTGAAAAAGCTGCTGAGAGAGAAACGGTTGGAGGACATTGTGGATAGAAATTTGAAGAGTTATGATCCAAAGGAAGTTGAGACGATTCTTCAGGTTGCGTTGCTTTGCACCCAAGGCTATCCCGAGGATCGTCCAACCATGTCAGAGGTGGTAAAAATGCTGCAGGGAGTTGGGTTGGCAGATAGATGGGCTGACTGGCAGCAACTTGAAGAGGCTAGGAATCAAGAATTCTCACTCATGACTCACCAATTTGTTTGGAATGATGAATCTACTCTTGATCAAGAAGCCATACAGCTTTCCAGAGCAAGATAA 1791 0.397 MFRQNFSRGPLKILTRWLIFLTILQVGCAIKDPDVEGEALLDVLHFLNDSNKQITDWDSFLVSPCFSWSHVTCRNGHVISLALASVGFSGTLSPSITKLKYLSSLELQNNNLSGPLPDYISNLTELQYLNLADNSFNGSIPAKWGELPNLKHLDLSSNGLTGSIPMQLFSVPLFNFSDTHLQCGPGFEQPCASKSENPASAHKSKLAKIVRYASCGAFALLCLGAIFTYRHHRKHWRKSDDVFVDVSGEDESKIFFGQLRRFSWRELQLATKNFSEGNVIGQGGFGKVYKGVLSDNTKVAVKRLIDYHNPGGEAAFEREVQLISVAVHRNLLRLIGFCTTTTERILVYPFMENLSVAYRLRDLKPGEKGLDWPTRKRVAFGTAHGLEYLHEQCNPKIIHRDLKAANILLDDEFEAVLGDFGLAKLVDARMTHVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGERAIDLSRLEEDEDVLLIDYVKKLLREKRLEDIVDRNLKSYDPKEVETILQVALLCTQGYPEDRPTMSEVVKMLQGVGLADRWADWQQLEEARNQEFSLMTHQFVWNDESTLDQEAIQLSRAR 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01927 596 Gene3D Phosphorylase Kinase; domain 1 243 350 - -
Gma05g01927 596 SUPERFAMILY Protein kinase-like (PK-like) 252 548 IPR011009 -
Gma05g01927 596 ProSitePatterns Serine/Threonine protein kinases active-site signature. 397 409 IPR008271 GO:0004672|GO:0006468
Gma05g01927 596 SMART serkin_6 274 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g01927 596 Pfam Leucine rich repeat N-terminal domain 35 73 IPR013210 -
Gma05g01927 596 Gene3D Ribonuclease Inhibitor 33 193 IPR032675 -
Gma05g01927 596 PANTHER LRR RECEPTOR-LIKE KINASE 12 596 - -
Gma05g01927 596 Pfam Leucine rich repeat 102 160 IPR001611 GO:0005515
Gma05g01927 596 Pfam Protein kinase domain 275 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g01927 596 ProSitePatterns Protein kinases ATP-binding region signature. 280 302 IPR017441 GO:0005524
Gma05g01927 596 ProSiteProfiles Protein kinase domain profile. 274 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g01927 596 Gene3D Transferase(Phosphotransferase) domain 1 351 566 - -
Gma05g01927 596 SUPERFAMILY L domain-like 37 171 - -
Gma05g01927 596 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01927 Gma-Chr5 40665801 40671612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01927 18 596 Receptor kinase-like Gene Family AT5G10290 55.372 0.0 653
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Gma05g01927 Pkinase 3.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01927 - - gmx:100799227 1191.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01927 05 40665801 40671612 Gma05g01927 05 40665801 40671612 ECH
Gma05g01927 05 40665801 40671612 Gma08g00038 08 304385 310748 GST