Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01918 ATGGGGGACGGAAGTGGGAGCCGGTGGAGCAGGGCGGAGTGGGTGCAGCAGTACGATCTCTTAGGAAAAATCGGCGAAGGCACTTACGGCCTCGTCTTCCTCGCCCGAACCAAATCCCCCGTTGGCACTCCCTCCAAATCCATTGCCATAAAAAAGTTCAAGCAATCCAAGGACGGCGACGGCGTCTCCCCCACCGCCATCCGCGAAATCATGTTGCTGAGGGAGATTACGCACGAGAACGTCGTCAAGCTCGTCAACGTACACATCAACCACGCCGACATGTCTCTCTACCTCGCCTTCGATTACGCCGAGCACGATCTCTATGAAATTATTAGGCATCACAGGGACAAACTCAACCATTCCATTAATCAGTACACTGTTAAGTCTTTGCTCTGGCAGTTGCTCAATGGACTAAGCTATCTGCACAGTAATTGGATGATACATCGTGATTTGAAGCCATCGAATATATTGGTTATGGGTGAAGGAGAGGAACATGGAGTTGTTAAGATTGCTGACTTTGGACTTGCGAGGATATATCAAGCTCCTCTGAAGCCGTTATCTGACAATGGGGTTGTTGTAACCATTTGGTATCGTGCACCTGAGTTGCTTCTTGGAGCAAAACATTATACCAGTGCTGTTGATATGTGGGCTATGGGATGCATTTTTGCTGAGTTGTTGACCTTGAAGCCACTATTTCAAGGGGCAGAAGTCAAAGCTACATCAAATCCCTTTCAGGTACTTGATGCAATAACTTATAGCTTTCTGGACATTGTTACTGTGCCAGGCCATCCCACATTAGAAAAGTGGCCTTCCTTAGCAAGTCTTCCGCATTGGCAACAAGATGTGCAACATATACAAGGACACAAATATGACAATGCCGGTCTCTATAATGTTGTACACCTGTCTCCAAAAAGCCCTGCATATGACCTCTTGTCAAAGATGCTTGAATATGATCCTCGTAAGCGTTTAACAGCAGCACAAGCTTTGGAGCATGAGTATTTCAAAATTGAACCATTACCTGGACGAAATGCACTTGTACCCTGCCAACTTGGAGAGAAAATTGTAAATTATCCCACTCGTCCAGTGGACACTACAACTGATCTTGAAGGGACAACCAATCTGCCACCTTCACAAACGGTAAATGCAGTTTCTGGTAGCATGCCTGGCAGCCATGGGAGATGGAATGAATCCTGGGGATATCTCAAAGCATCGAGGTGTTCCACAGGCCCATCAGCCACAACAGTTGAGAAGGAAGGAGCAAATGGGGATGCCGGGATACCCTGCACAACAGAAGTCAAGACGATTATAAGGTTTCTGCTGGAAGAGAGACTAAGTGAAGATAGATTTGGGGTCAATACTTCAGTACCTGAACTCATGCAGGACATTTCTGGACAGGGTTTGCCTTCAATACTTGCAAGCCTCACTTTATTGCAATCAAAGATTGGGTGCATTCTTCTCTGGAATTTTGATGCTAAAATGCCAAATGTATGCTGGAACACCAATGAAGCCATAAAAGGGAATAAACAATATTTTGCCTCACATGATTGA 1548 0.4587 MGDGSGSRWSRAEWVQQYDLLGKIGEGTYGLVFLARTKSPVGTPSKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKLNHSINQYTVKSLLWQLLNGLSYLHSNWMIHRDLKPSNILVMGEGEEHGVVKIADFGLARIYQAPLKPLSDNGVVVTIWYRAPELLLGAKHYTSAVDMWAMGCIFAELLTLKPLFQGAEVKATSNPFQVLDAITYSFLDIVTVPGHPTLEKWPSLASLPHWQQDVQHIQGHKYDNAGLYNVVHLSPKSPAYDLLSKMLEYDPRKRLTAAQALEHEYFKIEPLPGRNALVPCQLGEKIVNYPTRPVDTTTDLEGTTNLPPSQTVNAVSGSMPGSHGRWNESWGYLKASRCSTGPSATTVEKEGANGDAGIPCTTEVKTIIRFLLEERLSEDRFGVNTSVPELMQDISGQGLPSILASLTLLQSKIGCILLWNFDAKMPNVCWNTNEAIKGNKQYFASHD 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01918 515 Gene3D Transferase(Phosphotransferase) domain 1 102 350 - -
Gma05g01918 515 ProSitePatterns Protein kinases ATP-binding region signature. 24 52 IPR017441 GO:0005524
Gma05g01918 515 PANTHER CYCLIN-DEPENDENT KINASE E-1 8 388 - -
Gma05g01918 515 ProSiteProfiles Protein kinase domain profile. 18 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g01918 515 SUPERFAMILY Protein kinase-like (PK-like) 13 335 IPR011009 -
Gma05g01918 515 PANTHER CELL DIVISION PROTEIN KINASE 8 388 - -
Gma05g01918 515 CDD STKc_CDK8_like 17 334 - -
Gma05g01918 515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Gma05g01918 515 Gene3D Phosphorylase Kinase; domain 1 5 101 - -
Gma05g01918 515 Pfam Protein kinase domain 18 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g01918 515 SMART serkin_6 18 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01918 Gma-Chr5 40560007 40573588 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01918 1 397 Core Cell Cycle Gene Families AT5G63610 76.601 0.0 630
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Gma05g01918 Pkinase 7.5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01918 K02208 - gmx:100794990 766.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01918 05 40560007 40573588 Gma05g01918 05 40560007 40573588 ECH
Gma05g01918 05 40560007 40573588 Gma08g00025 08 206161 223994 GST