Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01917 ATGTCGGTGGTTCCTTGTAATTGCAACCACACCACAGAGAAAGATAACCTTAGTGGTGAAAGTGAGAGCTTTCACAAGTTTTTTGAGTGCTGGATTTCTGAGCAAAAACAACATCTGAAGGACCTTTTAGCTGCTGCATCAACCCAGCTGATTAGTGATGAGGAGCTTCAGGCACTGAATGATAAGGTGGTTGAGCATTATGAGTACTACTACAAGGCCAAGTCAAGGTGTGCAAAGCAAGATGTATTGGCCATGTTGTCCCCAACATGGATGAGTTCCTTGGAAGAGGCTTTTCTTTGGATTGGTGGATGGAGACCAAGTATGGCATTTCACTTGATATATTCAAAGTCCGGCTTGCAATTCGAGGCCCGGCTCGATGAAGTCCTCCAGGGTCTAAGAACACATGATTTGGGGGACCTATCAGCATCACAACTTGCTCAGCTTGATGAGATGCAAAGGAGGACTATCTTGGAGGAGAGGGAGATCACTGATTTGATGGCAAGGCACCAGGAGACAGTGGCTGATGCCTCAATGGTGGAGTTGTCTCATGTGGTTTCTGAGATGATTAGAGCCAATCAAAGAGGAGAGGTTGATCAGAGTAAGGAAATAGAGGACAAGGTTGAATCAACTCTTGTGCTTAAGGAGGAAGGTTTGGAGAAGATTCTGCTGAAAGCTGATGAGCTAAGGTTTATAACACTCAAGGATGTTGTTGATGTTCTGACTCCAAAACAGGCCATTCATTTCTTGATTGCTGCTGCAGAGCTGCACCTGAGGCTGCATGAGTGGGGCAAGAAGATGGATGCAAGAAAATGCAATCAAGGTTTTGGTGAAGaatcaTATCAAAAGGAATATGAAGTATTGAGGGAAAGAACTGCTAGTGGGGATCTTGGTGCTGCACAAGTCCAGGCAAATGCTGGTGTGGATCCTGATGTTGTGACTGCTATCCGGAGGCAACGGCTAAGTGAGATTGCACTATGGTTTTGTCCTTATAATAACAGTCACAATAACAACATTAGCAGTGTGGACACAGTTTCACAGATTGTTTCTGATCAGCCTTTGAATATTGTTACTGAAGATGCTGCCCCCGTACAAAATCATGCAACCAAGTGGGCAGTGAAGGGTACAAGGATCCTGCTTGCTACGGTGTTTCTTCATCTGCTAGACCAAATACTGGTTTTACTTAAAGAAGTTGCTTTCATCCTTATTCAATATTCTACCAGTATTTTTCAGTAA 1233 0.4388 MSVVPCNCNHTTEKDNLSGESESFHKFFECWISEQKQHLKDLLAAASTQLISDEELQALNDKVVEHYEYYYKAKSRCAKQDVLAMLSPTWMSSLEEAFLWIGGWRPSMAFHLIYSKSGLQFEARLDEVLQGLRTHDLGDLSASQLAQLDEMQRRTILEEREITDLMARHQETVADASMVELSHVVSEMIRANQRGEVDQSKEIEDKVESTLVLKEEGLEKILLKADELRFITLKDVVDVLTPKQAIHFLIAAAELHLRLHEWGKKMDARKCNQGFGEESYQKEYEVLRERTASGDLGAAQVQANAGVDPDVVTAIRRQRLSEIALWFCPYNNSHNNNISSVDTVSQIVSDQPLNIVTEDAAPVQNHATKWAVKGTRILLATVFLHLLDQILVLLKEVAFILIQYSTSIFQ 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01917 410 PANTHER OS01G0159000 PROTEIN 18 272 - -
Gma05g01917 410 Pfam Seed dormancy control 38 115 IPR025422 GO:0006351|GO:0043565
Gma05g01917 410 PANTHER - 18 272 - -
Gma05g01917 410 ProSiteProfiles DOG1 domain profile. 21 269 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01917 Gma-Chr5 40553688 40557549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01917 282 384 C3H Transcription Factor Family AT5G08750 52.727 7.68e-24 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01917 - - gmx:100784399 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01917 05 40553688 40557549 Gma05g01917 05 40553688 40557549 ECH