Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01906 ATGATGTTCCCCAATTTTCGCTTAACTTTACTCCTAGTAAGTGTTATATATTCTCTGCTTCACTTCAATCTGCAGTCAGCACCGTCGTTAAAACCTGCCTCACTCGATTATTACTATTATCACCAGGGCAAAAAGTACAGGGGCGGCATCGCCTCTGCAAGGTTGTGCATGAAGATGCAGGCAGAAGTGTGGCGGTTGACGAGTCCAAGTTTGGTGAACTCTAAGTTTGAGCTGCTGTCGGTAGAGAGGAAGCCGAGGCCGAAGCATGTTGAGGGTCTGGCTGGAGGGAAAAAAAGTTGTGATGATGATGGTTCAGAGTTTGGGAGTGCAGGTTCTTCGTTTTCTCCACAACAGGAGAGCTTGTCAGAGGGTACTAAAAATGGTGATGGGGATGGTATTGAGTATGATGCAGATGATTCTGTTCAAGAGTTGGATCATTTTGAACCTGAGAATGATGGTTCTATAACTTTGACTGGCCCCAGATCGACTTATAAGTTGCAGGCTAGAATTGCGAATATGTTGTATCCGCATCAGCGGGAGGGGTTGAAGTGGCTCTGGTCTTTGCATTGTCTGGGAAAAGGTGGAATCTTGGGGGATGACATGGGTTTGGGGAAAACAATGCAGATGTGTGGCTTTCTAGCTGGACTGTTTCATTCTCGTTTAATTAGAAGAGCATTGATTGTAGCACCCAAAACCTTATTGCCCCATTGGATCAAAGAGTTGTCAGCTGTGGGTCTATCCGAGAAGACAAGAGAGACAAAGGAGTTCTTCTCACAACATGATATTGTCCGCAACAATTCTAAGTCCTTACAGGGGAATAATTATTTTGATGATGAGGATAATGAAGAAGGTGTAACATGGGACTACATGATACTTGATGAGGGACACCTTATAAAGAACCCTAGCACACAAAGGGCTAAAAGTTTGCTTGAAATACCAAGTGCTCATTGCATTATCATTAGCGGCACACCTTTGCAAAATAATCTGAAGGAGTTGTGGGCATTGTTCAATTTCTGTTGCCCAGAGTTGCTTGGTGACCACGAATGGTTCAAAGAAAGATTTGAAAATCCCATACTTCGTGGAAATGACAAACATGCTTCTTACAGGGAGAAGCGTGTTGGTTCATCTGTAGCAAAGGAACTAAGAGATTGTATTCATCCTTACTTTTTGAGACGTTTGAAGAGTGAGATTTTCAATCAAGATGATGAGAAAACAACTACAAAACTTTCTCAGAAACAGGAGATCATTGTGTGGCTCCGACTGACCAGCGTTCAGCGGCATCTTTATGAAGCATTTTTGAATAGTAAGATTGTTCTCTCAGCAATTGATGGCTCACCACTGGCTGCCATTACGATTTTGAAGAAAATATGTGATCATCCACATCTGTTGACAAAGCGGGCTGCTGAGGGTGTGTTGGAAGGGATAGACTCAATGCTAAAGCCAGAAGAGGCTAATGTTGCAGAAAAATTGGCAATGCACATAGCAGATGTTGCAGGCAAAGATAAGTTTAAAGACAAGCAAGATGTGTCATGCAAAATTTCCTTCATTATCCCGGAGTTTGCATTTAATCCTAAGGATGTTGGGTTAAGCAAAAAAGGTTCTTCTCCTAGCAGTGCTGGTAAATTGACCGAGTCAGAAATCAAGGATAAAATTAAGAGTATCTCTCAAACACTCTCAAATATGGCCTGGGCTTCTAAATTCCTGGCAAGGGCGAGAAACTAA 1722 0.4257 MMFPNFRLTLLLVSVIYSLLHFNLQSAPSLKPASLDYYYYHQGKKYRGGIASARLCMKMQAEVWRLTSPSLVNSKFELLSVERKPRPKHVEGLAGGKKSCDDDGSEFGSAGSSFSPQQESLSEGTKNGDGDGIEYDADDSVQELDHFEPENDGSITLTGPRSTYKLQARIANMLYPHQREGLKWLWSLHCLGKGGILGDDMGLGKTMQMCGFLAGLFHSRLIRRALIVAPKTLLPHWIKELSAVGLSEKTRETKEFFSQHDIVRNNSKSLQGNNYFDDEDNEEGVTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHCIIISGTPLQNNLKELWALFNFCCPELLGDHEWFKERFENPILRGNDKHASYREKRVGSSVAKELRDCIHPYFLRRLKSEIFNQDDEKTTTKLSQKQEIIVWLRLTSVQRHLYEAFLNSKIVLSAIDGSPLAAITILKKICDHPHLLTKRAAEGVLEGIDSMLKPEEANVAEKLAMHIADVAGKDKFKDKQDVSCKISFIIPEFAFNPKDVGLSKKGSSPSSAGKLTESEIKDKIKSISQTLSNMAWASKFLARARN 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01906 573 MobiDBLite consensus disorder prediction 88 104 - -
Gma05g01906 573 Gene3D - 154 391 IPR038718 -
Gma05g01906 573 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 392 IPR027417 -
Gma05g01906 573 PANTHER SNF2/RAD54 FAMILY MEMBER 105 516 - -
Gma05g01906 573 MobiDBLite consensus disorder prediction 88 135 - -
Gma05g01906 573 Gene3D - 422 510 - -
Gma05g01906 573 SMART ultradead3 170 353 IPR014001 -
Gma05g01906 573 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 186 342 IPR014001 -
Gma05g01906 573 MobiDBLite consensus disorder prediction 106 125 - -
Gma05g01906 573 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 407 463 IPR027417 -
Gma05g01906 573 Pfam SNF2-related domain 177 462 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01906 Gma-Chr5 40468757 40474341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01906 191 467 RAD5 or RAD16-like Gene Family AT5G22750 23.919 6.54e-17 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gma05g01906 SNF2_N 3.3e-42 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01906 K20093 - gmx:100781188 961.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01906 05 40468757 40474341 Gma08g00017 08 127434 136450 GST