Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01902 ATGGAAGATGAGAGCCATAATAACACTTTGCCAAATGGATTCAACACAGGAAGCCCCGAAAGTCCTTTCTTAAAGACAAGCACCACCACCACACAACACAACAAAGAACAGGACCGATTTCTCCCTATAGCCAACGTGGGAAGAATCATGAAAAAAGTGATTCCCCCCAACGGCAAAATCTCAAAGGACGCAAAAGAGACAGTTCAAGAATGCGTTTCGGAGTTCATTAGTTTCGTGACCGGGGAAGCTTCTGACAAATGCCAAAGGGAAAAGAGAAAGACCATCAATGGAGACGATGTCATATGGGCCATCACAACCCTAGGCTTTGAGGATTACGTGGAACCCTTGAAAACTTACCTCCAGAAATATAAAGAGATAGAAGGAGAAAAACTTAGCATTCCAAAGCAAATGCGTTCTGAACAAAGGCTACAACAACACCATAATAATTATCATGACCAAAATAATCAACCATTCAATGGTGCATATGCCTCATCAAATCTCATTTCTCAGCCTCCTTATGTGCCCACTGATCAGAAGTTTTCTCTAACCTTCTCCCCAAACTCTATTCAGAGTCAGCTACGACAGCAAGACCAGATTGATTCTGTGGGGCACTGGTACGAATAA 624 0.4263 MEDESHNNTLPNGFNTGSPESPFLKTSTTTTQHNKEQDRFLPIANVGRIMKKVIPPNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDVIWAITTLGFEDYVEPLKTYLQKYKEIEGEKLSIPKQMRSEQRLQQHHNNYHDQNNQPFNGAYASSNLISQPPYVPTDQKFSLTFSPNSIQSQLRQQDQIDSVGHWYE 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01902 207 MobiDBLite consensus disorder prediction 1 35 - -
Gma05g01902 207 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 40 104 IPR003958 -
Gma05g01902 207 SUPERFAMILY Histone-fold 37 146 IPR009072 GO:0046982
Gma05g01902 207 ProSitePatterns NF-YB/HAP3 subunit signature. 71 87 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gma05g01902 207 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-7 1 200 - -
Gma05g01902 207 PRINTS CCAAT-binding transcription factor subunit A signature 68 86 - -
Gma05g01902 207 PRINTS CCAAT-binding transcription factor subunit A signature 87 105 - -
Gma05g01902 207 PRINTS CCAAT-binding transcription factor subunit A signature 106 124 - -
Gma05g01902 207 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 200 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gma05g01902 207 Gene3D Histone, subunit A 29 164 IPR009072 GO:0046982
Gma05g01902 207 MobiDBLite consensus disorder prediction 7 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01902 Gma-Chr5 40438260 40438883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01902 13 205 CCAAT-HAP3 Transcription Factor Family AT2G13570 60.784 4.42e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gma05g01902 CBFD_NFYB_HMF 5.8e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01902 K08065 - gmx:100780647 424.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01902 05 40438260 40438883 Gma08g00012 08 90088 90753 GST