Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01887 ATGCCGGCTTGGTGGAATAGAAAGTGGAGCAAGAGCAAGGAGGAGGATGAGGAGGATGAGCCACGTGCCGGTTTTCACTTGAATTTTATGAAATCTCCGGTTTCTGTTACATCGTCTAAGAGCAAGAGTAAGACCACGACGCCGACGCCGATGAAGAAGAAGAAGAAGCCCAAGAGCTTCGACGAGAAGGTGGAGGGTGTTCCCTTGCCTCGTCCGGCGCATAGTCACGCCGATCCTCTTGGATCTGTTTCGGTGTCGGGGGGTTCCAGCGTCAGCTCCTCCACCTCCTTCGACGATCATCCAATTTCGTCTCCCAACACCAACCCCAACCCCAACAGAGGACATGATGAGGTTAGGGTCAATGTAAGGTCAAAAAGTCCGGGTCCTGGGTCAAGAGGACCTACCAGTCCTACCTCACCGCTTCATCAAAGGTTGAATAATTTGAGCCTTGACTCTCCTACGGGGAGTCAGTGTCATCCATTACCTCTTCCACCTGGCTCTCCAACTAGTCCTTCTTCTGTGCTTTCCAACGCACGAGCAAATGGACTTTTGGAAAATGCTACTAGCAATGTGTCCAAGTGGAGAAAAGGAAAGCTTCTAGGACGGGGAACATTTGGGCATGTATATCTGGGATTCAATAGtgaaaatggacaaatgtgtgcaataaaagaggtcaaggttgtctctgatgatcaaacatcaaaagagtgcctcaaacaacttaaccagGAGATAAATTTGCTAAATCAGCTTTCACACCCTAATATTGTTCAATACCATGGGAGTGAACTGGTAGAAGAATCACTTTCTGTATATTTGGAATATGTCTCTGGTGGTTCTATCCATAAATTACTTCAGGAGTATGGTTCATTTAAGGAGCCTGTTATTCAAAATTATACCAGGCAGATTGTCTCTGGACTTGCCTATCTGCATGGAAGAAATACAGTACAcagggatattaaaggggcgaacatactagttgatcctaatggtgaaatcaaactggcagactttggaatggctaaacatataaattcttctgcctcaatgctttcattcaaaggaagtccatactggatggcacctgaggttgtaatgaatacaaatggctatagtcttccagttgatatatggagcttgggatgcacaattattgaaatggcaacatcaaaacctccatggaatcagtatgaaggggtagctgccatatttaaaattgggaacagcaaagatatgcctgaaatccccgagcatctttcgaacgatgcaaaaaatttcatcaagctatgcttacaaagagacccattagctcgcccgacagcccataagttactagaccaccccttcattcgagatcaatcggcaacaaaagctgcaaatgtcagcataaccagagatgcttttccttgcatgtttgatggaagccggacaccgCCTGTGTTAGAGTCCCATTCCAACCGAACAAGTATAACTTCTCTTGATGGAGATTTTGCATCAAAGCCAGCTCTTGCAGCACCGCGAGCATTAAGGAGTCCTAGAGATAACACAAGAATGATCACATCTTTACCAGTATCTCCCTCTTCAAGTCCATTGCGACGGTATGGGCCAACGCATCAGAGCTGTTTTTTCTCTCCTCCTCATCCAGCTTACACAATAATGGGACAAAGTAGTTACACTTTGAATGACATATCATCATATCCAATGAGATCAAATGCCACGTTTGCTCTTGATCCTTGGCATGAAACATCTCGATACAGAGCCAATACACCACCTGGTGGATCTCCAAGAATGAGACTCATTTGA 1803 0.315 MPAWWNRKWSKSKEEDEEDEPRAGFHLNFMKSPVSVTSSKSKSKTTTPTPMKKKKKPKSFDEKVEGVPLPRPAHSHADPLGSVSVSGGSSVSSSTSFDDHPISSPNTNPNPNRGHDEVRVNVRSKSPGPGSRGPTSPTSPLHQRLNNLSLDSPTGSQCHPLPLPPGSPTSPSSVLSNARANGLLENATSNVSKWRKGKLLGRGTFGHVYLGFNSENGQMCAIKEVKVVSDDQTSKECLKQLNQEINLLNQLSHPNIVQYHGSELVEESLSVYLEYVSGGSIHKLLQEYGSFKEPVIQNYTRQIVSGLAYLHGRNTVHRDIKGANILVDPNGEIKLADFGMAKHINSSASMLSFKGSPYWMAPEVVMNTNGYSLPVDIWSLGCTIIEMATSKPPWNQYEGVAAIFKIGNSKDMPEIPEHLSNDAKNFIKLCLQRDPLARPTAHKLLDHPFIRDQSATKAANVSITRDAFPCMFDGSRTPPVLESHSNRTSITSLDGDFASKPALAAPRALRSPRDNTRMITSLPVSPSSSPLRRYGPTHQSCFFSPPHPAYTIMGQSSYTLNDISSYPMRSNATFALDPWHETSRYRANTPPGGSPRMRLI 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01887 600 Gene3D Transferase(Phosphotransferase) domain 1 191 469 - -
Gma05g01887 600 Pfam Protein kinase domain 195 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g01887 600 MobiDBLite consensus disorder prediction 31 46 - -
Gma05g01887 600 CDD STKc_MEKK1_plant 193 450 - -
Gma05g01887 600 MobiDBLite consensus disorder prediction 54 69 - -
Gma05g01887 600 SUPERFAMILY Protein kinase-like (PK-like) 192 540 IPR011009 -
Gma05g01887 600 MobiDBLite consensus disorder prediction 128 156 - -
Gma05g01887 600 MobiDBLite consensus disorder prediction 1 176 - -
Gma05g01887 600 ProSiteProfiles Protein kinase domain profile. 194 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g01887 600 MobiDBLite consensus disorder prediction 8 25 - -
Gma05g01887 600 PANTHER MAP KINASE KINASE KINASE 1 581 - -
Gma05g01887 600 SMART serkin_6 194 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g01887 600 MobiDBLite consensus disorder prediction 82 114 - -
Gma05g01887 600 ProSitePatterns Protein kinases ATP-binding region signature. 200 223 IPR017441 GO:0005524
Gma05g01887 600 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01887 Gma-Chr5 40342159 40347940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01887 1 513 MAP Kinase Kinase Kinase AT1G53570 56.906 0.0 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gma05g01887 Pkinase 1.8e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01887 K04421 - gmx:100787064 1054.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01887 05 40342159 40347940 Gma04g02054 04 50982457 50988122 PCT
Gma05g01887 05 40342159 40347940 Gma06g01363 06 12843551 12849512 PCT
Gma04g02054 04 50982457 50988122 Gma05g01887 05 40342159 40347940 PCT
Gma06g01363 06 12843551 12849512 Gma05g01887 05 40342159 40347940 PCT