Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01883 ATGGCCAAAGCTGTTGGAGTTCGGTTCCACCCTACTGGTGTTGAATTAGTTGTGTACTTTCTGAAGAGGAAAGTGATGGCAAAAAAAATCTGTGATGGTTTCATTGCTGAACTTGACATATACAAGTATGCTCCTTGGGGTCTCCCAGATAAGTCTTGTCTGAGAACTGGAGAATTGGAATGGTACTTTTTCTGCCCGCTAGAGAAGAAATATGGCAGTGGGAGCAAGATGAAGCTTGCTACCAAAATTAGGCTTGAAGATAAGGACCTCGCTGACAAAGGGATTGCTCAGGATTCCTATGTAGTCTGCAAGGTCTTCCAAAAGGAAGGTCTTGGTCCCAGGAAGGGGGCACACTGTGCGAGACCATTTAATGAGGAAGAGTGGGATGATGAGGAAATTGGAATACCTTGTGCTGCTTTGACTGCACCAGTTCCCATCTTGCCTATGACATCTGATGGTTCTGTTCCAAATGACAATCTCCCTGCTAGTGGATGTACTGGGTCAGCATCCATATCATGTCTATCAGGATCACTGCCTTCTCCTGGAGGTCTATAA 555 0.4541 MAKAVGVRFHPTGVELVVYFLKRKVMAKKICDGFIAELDIYKYAPWGLPDKSCLRTGELEWYFFCPLEKKYGSGSKMKLATKIRLEDKDLADKGIAQDSYVVCKVFQKEGLGPRKGAHCARPFNEEEWDDEEIGIPCAALTAPVPILPMTSDGSVPNDNLPASGCTGSASISCLSGSLPSPGGL 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01883 184 ProSiteProfiles NAC domain profile. 3 152 IPR003441 GO:0003677|GO:0006355
Gma05g01883 184 Gene3D NAC domain 12 84 IPR036093 GO:0003677|GO:0006355
Gma05g01883 184 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 84 182 - -
Gma05g01883 184 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 84 - -
Gma05g01883 184 Pfam No apical meristem (NAM) protein 5 81 IPR003441 GO:0003677|GO:0006355
Gma05g01883 184 PANTHER PLANT NAC DOMAIN PROTEIN 84 182 - -
Gma05g01883 184 PANTHER PLANT NAC DOMAIN PROTEIN 4 84 - -
Gma05g01883 184 SUPERFAMILY NAC domain 4 108 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01883 Gma-Chr5 40304761 40306901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01883 4 179 NAC Transcription Factor Family AT5G64060 41.176 6.62e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma05g01883 NAM 5.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01883 - - gmx:100778933 293.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01883 05 40304761 40306901 Gma04g02057 04 51029327 51033656 PCT
Gma05g01883 05 40304761 40306901 Gma06g01360 06 12806515 12809317 PCT
Gma04g02057 04 51029327 51033656 Gma05g01883 05 40304761 40306901 PCT
Gma06g01360 06 12806515 12809317 Gma05g01883 05 40304761 40306901 PCT