Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01877 ATGGAGACCAACACTAGTGCATTCACAAATGTGAACAGCACTTGGAATCTTGAAAAGATGGAAACAAATGAACAACAAAATGATGAACATAATATTATTCTCCAAGTCCAAGACCCTATGGGTTCTGGGATTTGGCCCAGCAACAACTACCACAACCTTCTTCAAATGCATCAAACACCCAACACAACAACCTTATCCATCATAGCACCACCACCCTCCTCATCAGGGTTCCTTGGAGACATACTGGGTGTTCACAACCTAGAAGAAGATGAAGAGCCAGAAGAAGAGCTAGGTGCCATGAAGGAGATGATGTACAAGATCGCTGCTATGCAACCCGTGGACATCGACCCCGCCACGATTCGAAAACCAAAGAGAAGAAATGTTCGCATCAGTGATGACCCTCAGAGTGTGGCTGCACGCCACAGGAGAGAGAGGATCAGCGAGAAAATCCGCATCCTCCAGAGACTCGTTCCCGGGGGAACCAAAATGGACACCGCTTCAATGCTTGATGAAGCCATTCGCTATGTTAAGTTCTTGAAGAGACAAATAAGGTTGCTTCAATCTATTCCTCAATCTTCAAATCCACCACAATGCATTGGTGTTGCTACTACTTCTCATCATGCTAGTACCTTGTTGTTAGCCCCTTCCTGTGATTGGCCTTTTGCACCAAATGTTCTTCCCAGTTCCACCGCCGCCACCGCCTCAATGGACATGTCGGCCGGACTGGGATTCGACGTCGGCCATGCTCATGCTTGTGATGGCTCCTCCAGCTTTAACCATCATGAGGTAATCAGTGAATAA 801 0.4707 METNTSAFTNVNSTWNLEKMETNEQQNDEHNIILQVQDPMGSGIWPSNNYHNLLQMHQTPNTTTLSIIAPPPSSSGFLGDILGVHNLEEDEEPEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSIPQSSNPPQCIGVATTSHHASTLLLAPSCDWPFAPNVLPSSTAATASMDMSAGLGFDVGHAHACDGSSSFNHHEVISE 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01877 266 Gene3D - 133 194 IPR036638 GO:0046983
Gma05g01877 266 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 179 IPR011598 GO:0046983
Gma05g01877 266 CDD bHLH_AtIND_like 131 188 - -
Gma05g01877 266 Pfam Helix-loop-helix DNA-binding domain 140 179 IPR011598 GO:0046983
Gma05g01877 266 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 23 250 IPR045843 GO:0003700|GO:0006355
Gma05g01877 266 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 193 IPR036638 GO:0046983
Gma05g01877 266 SMART finulus 136 185 IPR011598 GO:0046983
Gma05g01877 266 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 23 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01877 Gma-Chr5 40234542 40235342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01877 99 187 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 83.146 8.38e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma05g01877 HLH 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01877 - - gmx:100775296 532.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01877 05 40234542 40235342 Gma04g02064 04 51098938 51099669 PCT
Gma05g01877 05 40234542 40235342 Gma06g01354 06 12736974 12737678 PCT
Gma04g02064 04 51098938 51099669 Gma05g01877 05 40234542 40235342 PCT
Gma06g01354 06 12736974 12737678 Gma05g01877 05 40234542 40235342 PCT