Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01876 ATGAGCGAAAGTGGTAGAAATACGTCTTCATCAGAGTGGAACTTGAGAGACGAACCTGAATTTGCATCTTATGGAGTTGCCAGTAGCAATAGTTCAAAGTGGTCCAATTTGAAAAGAAATGATGAGTTAAAACCCACAATGGGATTTTCATGCGAGGAACCTGTTTCTGGACGCAAAGGTTCAAATAAGGATGATATTGCGAATACAAATTACGGAGTTTGGGATGCAACAAATGCACAAGACACTGATGGAAGTTACAACATGCAGATCTCTCCTGGGCTTGATGAGGATTATAAAAATAAGTGCAATCAATCCCTAAAAGATGGCTGCAGTAAACTATTCAGCAGGAGTAGGAGTCGGAGCCCTCCACGTAGTTTTAGGTGGGATTCAGGTAGGGTTGGAGGATTGACACAACCATATTGTAGAGATTTTGTTGCTGGGAAATGCAGAAGAGGCAACCGATGTCGTTTCCTTCACCATGACGATCAAAATTATGGTAATAGCTGGGAAAATAGACACATATATTCTGCTCCAAATGAAAATAATAACTATTCTCGTACAATTGGAAGATCATATAATAGAACTTGCTTCCATTATGCACAAGGAAGGTGTAAAATGGGAGCATCATGCAAGTATGTGCATCATGACAATTTTGATAGAAGGCGCACAGAGAGTTGTTTAGAGCAGGGTGTTCAACATGGTACAAACCAGAATAGATTGCATGGTGAATCAACATTTTCAAGTGATATCAAGAAATCCAATTGGACTGCAAAAAATGATAGTGCCAACGTTCACACTTCCCAGACAGTAGGTGCAGACATTTGGCTTGATAATGAAAAAATGTCTCCTCCTAATTGGATTTATGATGTGAGATCTTCCATCCATATTAACCAAGAGCAAGGGCAGAGTAAGCAACAAGTTGCTCCAGGACAAGTATTGCATCAGAATGTTTCTAAAACATTCATCAAGCCAGAGCCTGTTGTTAGATTCCCGAAGCAGCGCGATCCAACATGTAATAGTAGGGAGCAAAAGAATGTTAATGCAACTGGGGGGGTGTCCCTTGCCTATTTTCCAAATAGACAACTTGTGAAGAATGAGCATCCAGTTCAGTTGAAGGGGATTCATACATTTAAATTTTCATTGGTTGAGTTCGTTAAGGAGCTTTTGAATCCAACATGGAAAGATGGTAAAATCACCAAAGAAGATTATAAAGCGATTGTGAAGAAAGTTACTGACAAAGTAATTGATACAGTGCAAGGGGCACATATTCCTCAGACACAAGAGAAAATTGATTGCTATTTATCATCATCAAAATCAAAGCTTAACAAACTTGTACAGGTCAGTGGTGGTTCTCCTACAAATTTCCATCATATGTATGAAGAATTCCAAATCTTGTCTTAG 1401 0.3911 MSESGRNTSSSEWNLRDEPEFASYGVASSNSSKWSNLKRNDELKPTMGFSCEEPVSGRKGSNKDDIANTNYGVWDATNAQDTDGSYNMQISPGLDEDYKNKCNQSLKDGCSKLFSRSRSRSPPRSFRWDSGRVGGLTQPYCRDFVAGKCRRGNRCRFLHHDDQNYGNSWENRHIYSAPNENNNYSRTIGRSYNRTCFHYAQGRCKMGASCKYVHHDNFDRRRTESCLEQGVQHGTNQNRLHGESTFSSDIKKSNWTAKNDSANVHTSQTVGADIWLDNEKMSPPNWIYDVRSSIHINQEQGQSKQQVAPGQVLHQNVSKTFIKPEPVVRFPKQRDPTCNSREQKNVNATGGVSLAYFPNRQLVKNEHPVQLKGIHTFKFSLVEFVKELLNPTWKDGKITKEDYKAIVKKVTDKVIDTVQGAHIPQTQEKIDCYLSSSKSKLNKLVQVSGGSPTNFHHMYEEFQILS 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01876 466 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 160 IPR000571 GO:0046872
Gma05g01876 466 SMART c3hfinal6 191 216 IPR000571 GO:0046872
Gma05g01876 466 SMART c3hfinal6 136 161 IPR000571 GO:0046872
Gma05g01876 466 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 225 308 - -
Gma05g01876 466 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 1 224 - -
Gma05g01876 466 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 371 446 - -
Gma05g01876 466 MobiDBLite consensus disorder prediction 1 16 - -
Gma05g01876 466 ProSiteProfiles Zinc finger C3H1-type profile. 190 217 IPR000571 GO:0046872
Gma05g01876 466 Gene3D - 134 230 - -
Gma05g01876 466 MobiDBLite consensus disorder prediction 1 39 - -
Gma05g01876 466 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 225 308 - -
Gma05g01876 466 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 224 - -
Gma05g01876 466 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 371 446 - -
Gma05g01876 466 ProSiteProfiles Zinc finger C3H1-type profile. 135 162 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01876 Gma-Chr5 40213543 40216904 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma05g01876 zf-CCCH 0.00017 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01876 - - gmx:102670057 905.975