Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01875 ATGAAACACGTAACCTGCACCCAAGGCAGCAGTATGGTGCTCGTGACCCGTCCCTCCATTCTGAACGGGTTTACGAAGAGACCGTTAGAAAAGAGGAATGTGGTTTTTTTGGGCGACGGCATCGGCAAGACCGTCATCACCGGCAACGCCAACGTCGGGCAACAAGGGATGACAACTTACAACTCTGCCGCTGTCGCGGTTCTTGGCGATGGATTCATGGCAAAGGATCTGACGATCGAAAACACGGGAGGCAACCAAGACACTCTTTATCCTCACTCACTGCGCCAATTCTACAAGTCATGCAGCATTGAGGGCAACGTGGACTTCATCTTTGGAAACGCTGCAGCAATTTTCCAAGACTGCCAAATCCTAGTTCGTCCCAGGCAAGTGAAACCAGAGAAGGGTGAGAACAACGCTATCACGGCAAATGCAAGGCAAGACCCTGCACAACCCACAGGCTTTGTTTTCCAGAATTGCTCGATTAATGGCACTGAGGAATATATGGCATTGTACCACAGCAAGCCTCAGGTACATAAGAACTATTTGGGTAGGCCTTGGAAGGAGTATTCTAGAACAGTTTCCATTAATTCGTTCTTGGAGGTCCTTGTGACACCCCAGGGTTGGATGCCATGGAGTGGTGACTTTGCTCTCAAGACACTTTACTATGGGGAGTTTGAGAACAAGGGTCCTGGCTCTTATTTGTCTCAGAGGGTGCCCTGGAGTAGGAAGATCCCTGCCGAACATGTGTTAACGTATTCAGTGCAGAATTTCATTCAAGGAAATGATTGGGTTCCATCACCTGTTGGTAGCCCAACTGATCACAGCAAGTTTGGAGCCATCACTAAATAG 849 0.4888 MKHVTCTQGSSMVLVTRPSILNGFTKRPLEKRNVVFLGDGIGKTVITGNANVGQQGMTTYNSAAVAVLGDGFMAKDLTIENTGGNQDTLYPHSLRQFYKSCSIEGNVDFIFGNAAAIFQDCQILVRPRQVKPEKGENNAITANARQDPAQPTGFVFQNCSINGTEEYMALYHSKPQVHKNYLGRPWKEYSRTVSINSFLEVLVTPQGWMPWSGDFALKTLYYGEFENKGPGSYLSQRVPWSRKIPAEHVLTYSVQNFIQGNDWVPSPVGSPTDHSKFGAITK 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01875 282 Gene3D - 25 83 IPR012334 -
Gma05g01875 282 PANTHER PECTINESTERASE 25 84 - -
Gma05g01875 282 Pfam Pectinesterase 84 261 IPR000070 GO:0030599|GO:0042545
Gma05g01875 282 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 84 267 - -
Gma05g01875 282 SUPERFAMILY Pectin lyase-like 30 265 IPR011050 -
Gma05g01875 282 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 25 84 - -
Gma05g01875 282 PANTHER PECTINESTERASE 84 267 - -
Gma05g01875 282 Gene3D - 84 271 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01875 Gma-Chr5 40205992 40207337 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01875 28 264 Carbohydrate Esterase AT5G09760 63.359 2.04e-121 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01875 - - gmx:100819675 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01875 05 40205992 40207337 Gma08g01360 08 11531602 11534113 GST
Gma05g01875 05 40205992 40207337 Gma06g01352 06 12711459 12713706 PCT
Gma06g01352 06 12711459 12713706 Gma05g01875 05 40205992 40207337 PCT