Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01869 ATGTCTAGTAGGTGTGCAGCATGCAAGAATCAAAGAAGAAAATGCTCTTCAGATTGCATTTTCTTTCCATATTTTCCTGCCAATGATCCTCAGAGATTTGCTTGTGTTCACAGAATCTATGGTGGCAGCAATGTTGGAAAAATGCTTCAGCAAATTCCACCATACTTACGTGAACAAGCTGCAAATACTTTGTATTTTGAAGCACAATGTAGGATTCAGGACCCTGTTTATGGATGTACTGGGATTATCTCTAAATTATATGAACAAATCAACAACACTGAAATTGCACTTGCGCATATCCAAACTCAAATTGCTTGTCTCAAGCTTCAAGTCCCACAGGAAAAAGCTGAGTCAAACTTCAATGTCTTGCGAGCACAAAGCAGCGGCACAACAGAGTTTCAATGGCAAAGTCAACTTAAAACAACAACAACAACAACGCTTCTAACTTGTTATCATAGGCGGGGATTACGAGGTGTGATATTAAGATAA 489 0.3885 MSSRCAACKNQRRKCSSDCIFFPYFPANDPQRFACVHRIYGGSNVGKMLQQIPPYLREQAANTLYFEAQCRIQDPVYGCTGIISKLYEQINNTEIALAHIQTQIACLKLQVPQEKAESNFNVLRAQSSGTTEFQWQSQLKTTTTTTLLTCYHRRGLRGVILR 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01869 162 PANTHER LOB DOMAIN-CONTAINING PROTEIN 23-RELATED 1 117 - -
Gma05g01869 162 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 117 - -
Gma05g01869 162 Pfam Lateral organ boundaries (LOB) domain 4 101 IPR004883 -
Gma05g01869 162 ProSiteProfiles LOB domain profile. 3 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01869 Gma-Chr5 40153642 40157557 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01869 4 113 AS2 family AT3G26620 58.182 5.41e-44 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gma05g01869 LOB 1.4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01869 - - gmx:100790640 251.906