Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01861 ATGTATGCCTCAAGTTCCTTTACTTCACAACTAGTCCATGACCTTCTCGTGGACACAAACTCAAGAAAGCTACTCCTTCAAGATCCACTTCTTCACCAATCAATGAACTCGGCCAACTCCCCAGATTCCATGAGTTACAACACAACAGACTCATACTTCACAGGTCGTGATTTCGATGCAAATGTTGTCATGATACTCTCAGTGCTGTTATGTGCTGTTATTTGCTCACTCGGGTTGAACTCCATCATAAAGTGTGTCTTGAGGTGTTCAAACATAGTCATCAATAATAATGACCCTTCTTCTTCTTCAAGTAGTGCGAGCTACAACCCTTCACCAAGATTGGCCAACAGAGGAATCAAGAAGAAAGCCCTCAAGACTTTTCCTACTGTGAGCTACTCAACAGAGATGAAACTCCCCGGTTTGGACACAGAGTGTGTGATATGCCTCTCGGAGTTTGCCAATGGTGATAAGGTTCGCATTTTGCCAAAGTGCAACCATGGTTTCCACGTTTGCTGCATTGACAAGTGGCTAAGTTCACACTCATCATGCCCCAAGTGCAGACAGTGCCTCATTGAGACTTGCAAGAAAATTGTTGGATCCCAAATACAACCAGTGGCACCAGTGCCAGAAACAATTATAAGGATTCAACCACTAGAACCTGAAGGTTTGGAGCGTAACTATAGGGAAGTATGCTAG 696 0.4397 MYASSSFTSQLVHDLLVDTNSRKLLLQDPLLHQSMNSANSPDSMSYNTTDSYFTGRDFDANVVMILSVLLCAVICSLGLNSIIKCVLRCSNIVINNNDPSSSSSSASYNPSPRLANRGIKKKALKTFPTVSYSTEMKLPGLDTECVICLSEFANGDKVRILPKCNHGFHVCCIDKWLSSHSSCPKCRQCLIETCKKIVGSQIQPVAPVPETIIRIQPLEPEGLERNYREVC 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01861 231 Pfam Ring finger domain 144 187 IPR001841 -
Gma05g01861 231 CDD RING-H2_PA-TM-RING 144 187 - -
Gma05g01861 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 191 IPR013083 -
Gma05g01861 231 PANTHER RING-H2 FINGER PROTEIN ATL78 1 231 IPR044602 GO:0016567|GO:0016740
Gma05g01861 231 SUPERFAMILY RING/U-box 123 192 - -
Gma05g01861 231 SMART ring_2 145 186 IPR001841 -
Gma05g01861 231 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 231 - -
Gma05g01861 231 ProSiteProfiles Zinc finger RING-type profile. 145 187 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01861 Gma-Chr5 40064259 40065155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01861 25 191 C3H Transcription Factor Family AT3G10910 45.882 6.78e-42 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01861 K19040 - gmx:100780127 442.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01861 05 40064259 40065155 Gma05g01861 05 40064259 40065155 ECH
Gma05g01861 05 40064259 40065155 Gma04g02075 04 51226198 51227269 PCT
Gma05g01861 05 40064259 40065155 Gma06g01339 06 12607391 12608662 PCT
Gma04g02075 04 51226198 51227269 Gma05g01861 05 40064259 40065155 PCT
Gma06g01339 06 12607391 12608662 Gma05g01861 05 40064259 40065155 PCT