Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01850 ATGGATTCGGAGGATTTCCGATCCATTCTGGAGAGTGCCGGCGTCGACGTTTGGGCCTTCATGGACGCCGCCATCGCGGTGGCTTCCGTCGACCACCCCGACGAGTTAAAGCGCCGGAGAGACAGAATCGTGGAGCGCCTTTACGCGAGTTCGGCGCTGCCGCAGTGTCGGAACTGTGACCCCGACGCCGGTGAAATCAGGACGCAGAGCAGTCCCTCCGCGGAGGAGGAAAAGGACCCCTACGGAGGCTTGCTGGACGAGGAGCAGAAGAAGATTCTATACATTAAAGAGCAACTGGAAGACCCTCACCAGTCCGAAGATTCGTTAGTGGAGTTGTTGCAGAATCTAGCAGACATGGATATCACATTCCCAGCGTTAGAGGAGTCTGACATTGGGAGGTATGTGAATCGGTTGCGGAAGCATTCGTCTAATGATGTCAAGAGATTGGTCAAGTTACTCGTCAGGAAGTGGAAGGAAATTGTAGATGAATGGGTGAAGTTGAAGTCCCCGGGATACCCGGGTACTGCTGTCATGGCTGATGAGGACTCGCCTCAGCAGAGAATCCTACAAAATGGGCACCGTCAGATTCCTGATTTTGCATACTCGCCAAATCCACACAATGGGAGTTCTGGGTCATCACAGCGCAACAATATTGAAGCAGAACGAAAACCAAAAGCAATTCCTCGCAAAGAAGCTCCCCCAAAACCATCGCCATCAGTCACTACTCCTGCTTCTCCTCCTCAAAACAGACAGAGAGAAGGCAATTTTGACCCGGATAGATTTGCTTCAGCGAGAAAACGGCTTCAAGAGAACTACAAAGAGGCTGCAAATGCCAAAAAGCAAAGAACGATTCAAGTGATGGATCTCCATGAGTTACCGAAACCCAAGAATGCCTTCCTTGGAAAAAACAAAGGCGGCACTGGTCAGGGAAGGCACTGGTGA 942 0.5127 MDSEDFRSILESAGVDVWAFMDAAIAVASVDHPDELKRRRDRIVERLYASSALPQCRNCDPDAGEIRTQSSPSAEEEKDPYGGLLDEEQKKILYIKEQLEDPHQSEDSLVELLQNLADMDITFPALEESDIGRYVNRLRKHSSNDVKRLVKLLVRKWKEIVDEWVKLKSPGYPGTAVMADEDSPQQRILQNGHRQIPDFAYSPNPHNGSSGSSQRNNIEAERKPKAIPRKEAPPKPSPSVTTPASPPQNRQREGNFDPDRFASARKRLQENYKEAANAKKQRTIQVMDLHELPKPKNAFLGKNKGGTGQGRHW 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01850 313 MobiDBLite consensus disorder prediction 294 313 - -
Gma05g01850 313 MobiDBLite consensus disorder prediction 59 82 - -
Gma05g01850 313 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 313 - -
Gma05g01850 313 Pfam TFIIS helical bundle-like domain 112 161 IPR017923 -
Gma05g01850 313 CDD TFIIS_I 89 162 - -
Gma05g01850 313 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 85 171 IPR035441 -
Gma05g01850 313 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 89 171 IPR035441 -
Gma05g01850 313 Coils Coil 261 285 - -
Gma05g01850 313 SMART TFS2_5 92 163 IPR003617 GO:0005634
Gma05g01850 313 MobiDBLite consensus disorder prediction 196 284 - -
Gma05g01850 313 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 313 IPR044790 -
Gma05g01850 313 MobiDBLite consensus disorder prediction 202 217 - -
Gma05g01850 313 MobiDBLite consensus disorder prediction 253 277 - -
Gma05g01850 313 ProSiteProfiles TFIIS N-terminal domain profile. 87 164 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01850 Gma-Chr5 39994549 39999040 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Gma05g01850 Med26 2.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01850 - - gmx:100820221 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01850 05 39994549 39999040 Gma08g01342 08 11356006 11357893 GST
Gma05g01850 05 39994549 39999040 Gma04g02082 04 51310363 51312292 PCT
Gma05g01850 05 39994549 39999040 Gma06g01332 06 12521619 12523614 PCT
Gma04g02082 04 51310363 51312292 Gma05g01850 05 39994549 39999040 PCT
Gma06g01332 06 12521619 12523614 Gma05g01850 05 39994549 39999040 PCT