Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01847 ATGAGCGTGAAAAATGATGTTCCTGGGAAAGAGGTAAACGTGCTGAAGGGTCACGAGGGTGGTGTGTTAGCCGCGAGGTTCAACACCGACGGCAATTATGTTCTAAGTTGCGGCAAAGACCGTACCATACGCCTCTGGAATCCTCACCGTGGCATCCATATCAAGACTTATAAATCCCACGCTCGCGAAGTCCGCGATGTCCATGTCACACAGGACAACTCCAAGTTATGTTCCTGTGGTGGAGATCGACAAATATTTTATTGGGACGTTGCAACTGGACGTGTAATTAGGAAATTTCGTGGCCATGATGGTGAGGTAAATGGTGTCAAATTCAATGAGTATTCATCTGTTGTAGTCTCTGCTGGATATGATCAATCGTTGCGTGCTTGGGACTGCAGATCCCACAGCACAGAGCCAATTCAGATTATTGACACATTTGCGGATAGTGTGATGTCTGTTTGTTTAACAAAAACTGAAATTATTGGAGGAAGTGTTGATGGAACTGTTCGAACATTTGACATTCGTATTGGCAGAGAAATATCCGATAATTTAGGGCAATCTGTCAACTGTGTATCAATGTCAAATGATGGTAACTGCATTCTAGCCGGTTGCTTAGACTCTACATTGCGTCTTTTGGACAGGTCCACAGGTGAACTGTTACAAGAATATAAAGGGCACACTAATAAGTCTTACAAATTGGATTGCTgCCTTACCAATACGGATGCTCATGTAACTGGTGGCTCTGAGGATGGCTTCATCTATTTTTGGGATCTTGTAGATGCATCTGTTGTTTCAAGATTCAGGGCTCATACCTCAGTGGTAACAAGTGTTAGTTATCATCCAAAGGAAAACTGCATGGTAACTTCTTCTGTGGATGGCACCATTAGAGTATGGAAGACATAA 903 0.4308 MSVKNDVPGKEVNVLKGHEGGVLAARFNTDGNYVLSCGKDRTIRLWNPHRGIHIKTYKSHAREVRDVHVTQDNSKLCSCGGDRQIFYWDVATGRVIRKFRGHDGEVNGVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDTFADSVMSVCLTKTEIIGGSVDGTVRTFDIRIGREISDNLGQSVNCVSMSNDGNCILAGCLDSTLRLLDRSTGELLQEYKGHTNKSYKLDCCLTNTDAHVTGGSEDGFIYFWDLVDASVVSRFRAHTSVVTSVSYHPKENCMVTSSVDGTIRVWKT 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01847 300 ProSiteProfiles Trp-Asp (WD) repeats profile. 15 56 IPR001680 GO:0005515
Gma05g01847 300 SUPERFAMILY WD40 repeat-like 7 299 IPR036322 GO:0005515
Gma05g01847 300 ProSiteProfiles Trp-Asp (WD) repeats profile. 267 300 IPR001680 GO:0005515
Gma05g01847 300 CDD WD40 11 299 - -
Gma05g01847 300 Pfam WD domain, G-beta repeat 265 299 IPR001680 GO:0005515
Gma05g01847 300 Pfam WD domain, G-beta repeat 54 89 IPR001680 GO:0005515
Gma05g01847 300 Pfam WD domain, G-beta repeat 217 257 IPR001680 GO:0005515
Gma05g01847 300 Pfam WD domain, G-beta repeat 94 131 IPR001680 GO:0005515
Gma05g01847 300 Pfam WD domain, G-beta repeat 185 211 IPR001680 GO:0005515
Gma05g01847 300 Pfam WD domain, G-beta repeat 9 47 IPR001680 GO:0005515
Gma05g01847 300 SMART WD40_4 260 299 IPR001680 GO:0005515
Gma05g01847 300 SMART WD40_4 50 89 IPR001680 GO:0005515
Gma05g01847 300 SMART WD40_4 216 257 IPR001680 GO:0005515
Gma05g01847 300 SMART WD40_4 8 47 IPR001680 GO:0005515
Gma05g01847 300 SMART WD40_4 177 213 IPR001680 GO:0005515
Gma05g01847 300 SMART WD40_4 136 173 IPR001680 GO:0005515
Gma05g01847 300 SMART WD40_4 92 131 IPR001680 GO:0005515
Gma05g01847 300 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 267 300 - -
Gma05g01847 300 ProSiteProfiles Trp-Asp (WD) repeats profile. 99 131 IPR001680 GO:0005515
Gma05g01847 300 Gene3D - 2 300 IPR015943 GO:0005515
Gma05g01847 300 PRINTS G protein beta WD-40 repeat signature 34 48 IPR020472 -
Gma05g01847 300 PRINTS G protein beta WD-40 repeat signature 118 132 IPR020472 -
Gma05g01847 300 PRINTS G protein beta WD-40 repeat signature 286 300 IPR020472 -
Gma05g01847 300 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 15 47 - -
Gma05g01847 300 PANTHER WD40 REPEAT PROTEIN 7 299 - -
Gma05g01847 300 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 99 131 - -
Gma05g01847 300 ProSiteProfiles Trp-Asp (WD) repeats profile. 57 98 IPR001680 GO:0005515
Gma05g01847 300 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 57 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01847 Gma-Chr5 39970302 39973787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01847 96 298 Miscellaneous Gene Families AT5G08390 27.143 2.41e-18 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01847 K13124 - gmx:100775310 621.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01847 05 39970302 39973787 Gma08g01339 08 11332933 11336445 GST