Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01844 ATGGACTTCGACGAGTACGAATACCTGGAGAAGACAGTGGAGGAAGACATAGATAAAGACTCCTCCAAGAAGAAGAAGGACATCACCGACAAGAGCGAGAGGAGTTACCGGAAGCCCCGCGACGTCGACGACGATCTCGACGCCGATGACAGAAAGAGCAAGAGGTCAAGGGGCGACGACGAGAACGGTGGTTCCAAGAAAGATCGCGACAGAGACAGAGAAAGAGACCGTGACCGCGAACGTTCCTCCGGCCGTCACAGGAGCGAGAGGGAGAGAGACGgagagaggaaagacagggataaggatagagagaggagggataaggataaggataaggatagggatagggatagggataggAGAGACCGTGATAGGGACGGAGATAGGGAAAAGGAGCGCGAGAGAAGAGACAAGGATAAGGAGAGAGAGGGGGAAAAAGAGGCGAGGGAGAGATCCACAAGGAGCAGGAGTCGCTCCGAGAGGGACAGAGACAGGGAGCGAGATTTCGAAATGCGCGATGGCCGGAGATTTAGGGTTAAGAAAGAGGCCTCAGAACCTGAGGCTGACCCAGAAAGGGATCAGAGAACTGTTTTTGCCTACCAGATGCCGTTAAAAGCAACAGAGAGAGATGTGTATGAGTTCTTTTCAAAAGCTGGCAAGGTGAGAGATGTCCGTCTGATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGCGATGTCAGTGCCAATGGCTATTGCTCTCTCTGGCCAACTTCTTCTTGGGCAACCTGTAATGGTGAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAATCTAATGCTTCTGGTGGAGCGGCCGGTGTAGCTGGGCCCTATGGAGCTGTGGACAGAAAATTGTATGTGGGAAATCTTCACTTCAACATGACTGAGAGTCAGCTGCGGGAGATTTTTGAACCATTTGGTCCGGTTGAGGTTGTCCAACTGCCTCTTGATTTGGAAACAGGACACTGCAAGGGTTTTGGGTTTGTTCAATTTACTCATCTAGAACATGCCAAGGCTGCTCAGAGTTTAAATGGAAAATTGGAGATTGCTGGCAGGACTATCAAGGTTTCATGTGTAACAGATCATGTTGCAAGCCAAGATGCAACTGCAAAATCTGCAGACTTGGATGACGATGAAGGTGGATTGACTTTAAATGCTCACTCAAGAGCATTGCTTATGCAGAGGCTGGCTGGCGCAGACCCTGCAAGGTATGTCGTTAATAATATTGCTCATTTTTGTAAATCTGTTCATTATCTTCACAGTTTTCTACTTTGCAGCATAGGTTTGCCTGTTGTGAATGGCTCAGTTCCTGCTCAGCAGGCTATCAGCTTGCCTATTGGTGCACCAGTTCTACCAACGCTAGTCATGCCTAATCCAGTGGTAGAACCTGTAGGAAACCCCAGCGAGTGTTTACTTTTAAAGAATATGTTTGATCCGAGCACTGAGACGGAACCAGATTTTGATATAGACATTAAAGAGGACGTAGAGGAAGAGTGTTCTAAATATGGCCGAGTGAAGCATATTTTTGTTGACAAAAAAAGTGCAGGTTTTGTGTATTTGCGGTTTGATACAGTGGAAGCAGCAAGTGCTGCTCAACATGCAATGCACTTGAGATGGTTTGCACGCAGGTTAATTTCTGCTGTCTTCATGCAACCAGAGTTGTACGAAGCCAAGTTTAAAGGGGAAGTTTGA 1734 0.4498 MDFDEYEYLEKTVEEDIDKDSSKKKKDITDKSERSYRKPRDVDDDLDADDRKSKRSRGDDENGGSKKDRDRDRERDRDRERSSGRHRSERERDGERKDRDKDRERRDKDKDKDRDRDRDRRDRDRDGDREKERERRDKDKEREGEKEARERSTRSRSRSERDRDRERDFEMRDGRRFRVKKEASEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASGGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDLETGHCKGFGFVQFTHLEHAKAAQSLNGKLEIAGRTIKVSCVTDHVASQDATAKSADLDDDEGGLTLNAHSRALLMQRLAGADPARYVVNNIAHFCKSVHYLHSFLLCSIGLPVVNGSVPAQQAISLPIGAPVLPTLVMPNPVVEPVGNPSECLLLKNMFDPSTETEPDFDIDIKEDVEEECSKYGRVKHIFVDKKSAGFVYLRFDTVEAASAAQHAMHLRWFARRLISAVFMQPELYEAKFKGEV 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01844 577 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 297 375 IPR000504 GO:0003723
Gma05g01844 577 SUPERFAMILY RNA-binding domain, RBD 297 566 IPR035979 GO:0003676
Gma05g01844 577 TIGRFAM SF-CC1: splicing factor, CC1-like family 90 573 IPR006509 GO:0003723|GO:0005634|GO:0006397
Gma05g01844 577 SUPERFAMILY RNA-binding domain, RBD 188 283 IPR035979 GO:0003676
Gma05g01844 577 CDD RRM3_RBM39_like 482 564 - -
Gma05g01844 577 CDD RRM2_RBM23_RBM39 299 371 - -
Gma05g01844 577 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 439 577 - -
Gma05g01844 577 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 417 - -
Gma05g01844 577 Gene3D - 118 280 IPR012677 -
Gma05g01844 577 PANTHER CC1-LIKE SPLICING FACTOR 439 577 - -
Gma05g01844 577 PANTHER CC1-LIKE SPLICING FACTOR 1 417 - -
Gma05g01844 577 CDD RRM1_RBM39_like 196 268 - -
Gma05g01844 577 MobiDBLite consensus disorder prediction 12 167 - -
Gma05g01844 577 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 506 558 IPR000504 GO:0003723
Gma05g01844 577 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 264 IPR000504 GO:0003723
Gma05g01844 577 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 299 369 IPR000504 GO:0003723
Gma05g01844 577 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 272 IPR000504 GO:0003723
Gma05g01844 577 SMART rrm1_1 196 268 IPR000504 GO:0003723
Gma05g01844 577 SMART rrm1_1 484 561 IPR000504 GO:0003723
Gma05g01844 577 SMART rrm1_1 298 371 IPR000504 GO:0003723
Gma05g01844 577 Gene3D - 479 576 IPR012677 -
Gma05g01844 577 MobiDBLite consensus disorder prediction 1 167 - -
Gma05g01844 577 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 390 501 IPR029123 -
Gma05g01844 577 Gene3D - 293 389 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01844 Gma-Chr5 39936975 39945219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01844 269 370 Eukaryotic Initiation Factors Gene Family AT4G34110 35.922 4.70e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01844 K13091 - gmx:100818613 832.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01844 05 39936975 39945219 Gma05g01844 05 39936975 39945219 ECH
Gma05g01844 05 39936975 39945219 Gma08g01336 08 11299422 11307054 GST