Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01802 ATGGATGCTACATCCTCACCGTTTGTTTCCTCAAGAAGAATGGGTGTATATGATCCTATCCACCAAATTAGCACGTGGGAAGAAAATTTCAAAAGTAATGATACTAATAATTTAACTGTATCCACATCCATAATTGGGGAGGTGGACATGAAGTTAGATAATCAGTTTCAGGTGCAATCAGAGGATGATACTCATGGAATATTTGGCACATCTGTGAAGTACGACCAAGACACTAACAGACTTACTGATAAGACACAACGACGTCTAGCACAAAATCGAGAGGCTGCTCGCAAGAGTCGATTGAGGAAAAAGGCATACGTGCAGCAGTTAGAATCATGTCGTTTGAAGCTCTTGCAGTTAGAGCAAGAGGTAGATCATGCAAAACAACAGGGATTGTATATTGGCAACGGATTGGGTTCTAATAATTTGGGTTTTGCTGGCTCTGTAAATTCAGGAATAACCCTTTTCAAGATGGAGTATGGAAACTGGGTGGAGGAACAAAATAGACAAATTTTGGAACTGAGAACTGCTTTAAGTTCTCATATCGGTGACATACAGCTCGGGACACTTGTACAAGGCATAATGAACCACTACACCAAACTCTTTGGCATGAAATCTGCTGCAGCAAAAGCAGATGTTTTCTATGTTATGTCTGGTATGTGGAAGACAACAGCTGAACGATTTTTCTTGTGGATTGGAGGATTTCGCCCCTCTGAACTTCTAAAGGTTCTGGTCCCTCTAAGTGAACCTTTGACAGAGCAACAACGGTTTGATGCCTATGGCCTTGAAAAATCATGCCAGCAAGCAGAAGATGCCCTTTCTCAAGGTATGGAAAAACTTCAGCAAATGCTTTCGGACTCTGTAGGACCAGGACAACTAGTTGAAGGAACCCACATTCCCCAAATGGATACTGCAATGGAGAGGCTAGAAGCTCTTGTGAGCTTTGTGAACCAGGCTGATCATCTACGACAAGAAACGTTGCGGCAAATGTATCGAATACTTACCATACGTCAGACTGGTCGATTTCTGCTTGCTTTGGGGGAATATTTTCAACGCCTGCGGGCTTTGAGCAAACTTTGGATTAATCGTCCTCAATTTCCAGGACATGCTTAG 1113 0.425 MDATSSPFVSSRRMGVYDPIHQISTWEENFKSNDTNNLTVSTSIIGEVDMKLDNQFQVQSEDDTHGIFGTSVKYDQDTNRLTDKTQRRLAQNREAARKSRLRKKAYVQQLESCRLKLLQLEQEVDHAKQQGLYIGNGLGSNNLGFAGSVNSGITLFKMEYGNWVEEQNRQILELRTALSSHIGDIQLGTLVQGIMNHYTKLFGMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKVLVPLSEPLTEQQRFDAYGLEKSCQQAEDALSQGMEKLQQMLSDSVGPGQLVEGTHIPQMDTAMERLEALVSFVNQADHLRQETLRQMYRILTIRQTGRFLLALGEYFQRLRALSKLWINRPQFPGHA 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01802 370 Pfam Seed dormancy control 171 245 IPR025422 GO:0006351|GO:0043565
Gma05g01802 370 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 1 368 - -
Gma05g01802 370 Coils Coil 103 130 - -
Gma05g01802 370 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 87 102 IPR004827 GO:0003700|GO:0006355
Gma05g01802 370 PANTHER TRANSCRIPTION FACTOR TGA9 1 368 - -
Gma05g01802 370 Pfam bZIP transcription factor 83 116 IPR004827 GO:0003700|GO:0006355
Gma05g01802 370 Gene3D - 83 132 - -
Gma05g01802 370 ProSiteProfiles DOG1 domain profile. 153 363 IPR025422 GO:0006351|GO:0043565
Gma05g01802 370 SUPERFAMILY Leucine zipper domain 84 123 IPR046347 GO:0003700|GO:0006355
Gma05g01802 370 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 82 112 IPR004827 GO:0003700|GO:0006355
Gma05g01802 370 SMART brlzneu 80 140 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01802 Gma-Chr5 39624472 39631235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01802 1 367 Calmodulin-binding Proteins AT5G65210 64.595 1.88e-173 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gma05g01802 DOG1 3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01802 K14431 - gmx:100808443 736.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01802 05 39624472 39631235 Gma05g01802 05 39624472 39631235 ECH
Gma05g01802 05 39624472 39631235 Gma08g01292 08 10961012 10968014 GST
Gma05g01802 05 39624472 39631235 Gma18g00192 18 1557890 1563668 PCT
Gma05g01802 05 39624472 39631235 Gma11g02383 11 39204045 39209870 PCT