Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01800 ATGACGGATTCTTCTCCTCTTATCCCTCCCTCACCGGTCACAGTCACCGAGATCGACCTCGAAGAGGGACCCTCCGAACAAATTCAATGCCGGATTTGTCTTGAAACTGATGGTAGAAATTTCATAGTTCCTTGTAAGTGCAAAGGTACGTCAAAGTACGTACATAGAGAGTGTTTAGATCATTGGCGAGCCGTGAAGGAAGGGTTTGCATTTGCCCATTGCACTACTTGCAAGGCTCCATACCATTTGCGTGTTCATGGTGCTTATAGACAATGGCGTACTTTCAAATTTCGGTTTTTTGTAACCCGAGACATTTTGCTTATATTTCTGGCTGTTCAGCTTGTCATTGCTTCACTTGCTTATTTGGTTTACCAAATAGATGGTTACGAGAAGTATTGGCTTCGTCTTGTTTGGGGTTTTGGTAGTGAGCTGAGCTTTTACTATATATGTGGAGCACTGGTGTTTTTTGTGTTGCTTGGCCTGTCTGGGTGCTTTATTACTTGTTCTGATCCAAGAATTCGCAGTGATTTGGGTCAGCCTTGTCGAGAAATATGTCTTTGTTGCTGTCAACCTGGAGTTTGTGCTGATCGTCATTTGCATGGTACTCCTTATATGTACGGTACTCCTTATATGTCGACTGATTGCAATGCATGCTGTGAGAATTGTGGAACTGAATGCTGTGGTTGCACTTGCATGAGAGGTTCTGAGGACGAAGCAGGGCTACCATTATTATTCATAATGGTTTTGTTTTTTCTGGTACTCTTTGCTGTACTTGGGATATTTTACAGTGTATTAGTGGCTACAATGATAGGACAACGGATATGGCAGCGTCATTATCACATACTTGCGAAAAGGATGCTAACAAAGGAGTATGTCGTTGAGAACATTGATGGAGAGATAGCAGGGCCTAATTGGACTCCTCCACCCCTCCCCCAGGAGCATGTACGGCAGCTGAAAACATTGGGCCTCCTATGA 975 0.4369 MTDSSPLIPPSPVTVTEIDLEEGPSEQIQCRICLETDGRNFIVPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVHGAYRQWRTFKFRFFVTRDILLIFLAVQLVIASLAYLVYQIDGYEKYWLRLVWGFGSELSFYYICGALVFFVLLGLSGCFITCSDPRIRSDLGQPCREICLCCCQPGVCADRHLHGTPYMYGTPYMSTDCNACCENCGTECCGCTCMRGSEDEAGLPLLFIMVLFFLVLFAVLGIFYSVLVATMIGQRIWQRHYHILAKRMLTKEYVVENIDGEIAGPNWTPPPLPQEHVRQLKTLGLL 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01800 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 89 IPR013083 -
Gma05g01800 324 PANTHER - 3 324 - -
Gma05g01800 324 SMART ringv_2 29 78 IPR011016 GO:0008270
Gma05g01800 324 CDD RING_CH-C4HC3_MARCH 30 78 - -
Gma05g01800 324 Pfam RING-variant domain 30 77 IPR011016 GO:0008270
Gma05g01800 324 SUPERFAMILY RING/U-box 25 82 - -
Gma05g01800 324 ProSiteProfiles Zinc finger RING-CH-type profile. 22 84 IPR011016 GO:0008270
Gma05g01800 324 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 3 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01800 Gma-Chr5 39602363 39606644 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01800 5 324 C3H Transcription Factor Family AT2G22120 72.446 4.07e-162 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01800 - - gmx:100803480 651.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01800 05 39602363 39606644 Gma05g01800 05 39602363 39606644 ECH
Gma05g01800 05 39602363 39606644 Gma18g00191 18 1538356 1543628 PCT
Gma05g01800 05 39602363 39606644 Gma11g02384 11 39224050 39230948 PCT