Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01798 ATGACGTCTGTGTATGAGTTCTTGTATCAGCTTTATGCCAAGGCAATAGTTCTATTAACATACATGCTAATACAACTTATCTTCATCATCCAGTACCTTAAGTCAGATACACATCCAATTTCCACCACCCAATACCTCAATTTCATCGAAGAGAAGAACCCCACTATTCAGTTCAATAGAAGATTGAAGGCAGAACACATAGATTGCAGAGTGTGCTTATCTGAATTCCAGGAAGGGGAGAAAGTGAGGAACCTCAATTGCAGACACACATTTCACAAGGATTGCTTGGACCAGTGGTTGCAACAATACTGTGCTACTTGCCCACTTTGCAGGAACAAGGTGCTCCCAGATGATGTTGTGGCCAACTACAACCTGCTTCAGAATCAGGCAGAATATGATGGGAATGATGACCAGCTTATCTTTTTGTTATCTGCATTAAGGGGTGGTAGCACTTTGCGCAGATATCTCTGA 471 0.4204 MTSVYEFLYQLYAKAIVLLTYMLIQLIFIIQYLKSDTHPISTTQYLNFIEEKNPTIQFNRRLKAEHIDCRVCLSEFQEGEKVRNLNCRHTFHKDCLDQWLQQYCATCPLCRNKVLPDDVVANYNLLQNQAEYDGNDDQLIFLLSALRGGSTLRRYL 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01798 156 SMART ring_2 69 110 IPR001841 -
Gma05g01798 156 Pfam Ring finger domain 68 111 IPR001841 -
Gma05g01798 156 PANTHER - 1 151 - -
Gma05g01798 156 CDD mRING-H2-C3H2C2D_ZSWM2 69 111 - -
Gma05g01798 156 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 116 IPR013083 -
Gma05g01798 156 ProSiteProfiles Zinc finger RING-type profile. 69 111 IPR001841 -
Gma05g01798 156 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 151 - -
Gma05g01798 156 SUPERFAMILY RING/U-box 48 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01798 Gma-Chr5 39590230 39590706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01798 68 121 C3H Transcription Factor Family AT1G15100 59.259 9.57e-20 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01798 K16282 - gmx:102661133 324.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01798 05 39590230 39590706 Gma05g01798 05 39590230 39590706 ECH
Gma05g01798 05 39590230 39590706 Gma08g01289 08 10936180 10936650 GST
Gma05g01798 05 39590230 39590706 Gma18g00189 18 1525004 1526040 PCT
Gma05g01798 05 39590230 39590706 Gma11g02386 11 39239307 39240304 PCT