Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01779 ATGGGAACCGCTATAGGCATGTACAGCAACAACAACATCGTACCGGATTTCCTAGATCCGTATAGTGAAGAACTGATGAAAGCACTTATGCCTTTTATGAAAAGTGATTATTTCTCTGCCTCTTCTTCTTCTTCTTCACGCGAATCACACCCTTCTCCTCTTATTCCATCTAATTCTCTCCCCTCCTCCAACCAAATCAGGCTCAACCAACTCACCCAAGACCAAATTCTCCAGATTCAGGCCCAAATCCACATTCAGCAGCAGCACGTGGCCCAAGGCCAAGCCCACCTGGGCCCAAAACGCGTCCCTATGAAACACGCCGGCACGGCCGCGAAAGCCGCGAAGCTCTACCGCGGGGTGCGGCAACGGCATTGGGGCAAGTGGGTCGCCGAAATCAGACTCCCCAAGAACCGCACGCGCCTCTGGCTCGGAACATTCGACACCGCAGAGGAAGCAGCATTAGCGTACGACAACGCTGCGTTTAAGCTCAGAGGCGAGTTCGCGCGTCTCAATTTCCCTCATCTACGACACCACGGAGCGTTTGTTTTCGGTGAGTTCGGAGATTACAGACCTCTACCTTCTTCCGTGGATTCGAAGCTGCAAGCTATTTGCGAAAGCTTGGCGAAACAAGAGGAAAAGCCGTGTTGCTCTGTCGAAGACGTGAAGCCCGTGATACACGCTGCTGAGCTGGCAGAGGTGGAGTCTGACGTGGCAAAATTGAACGCTGAATATGTTTATCCCGAGTTCGAGGATTTTAAGGTCGAGAACGAGAACCCAATGTTGTCCTCGTCTGTGTCTGGCGAATCTTCTTCGCCTGAATCTGGTGTTACTTTCTTGGATTTCTCGGACTTCTCGGATTCTAATAATCAGTGGGATGAAATGGAGAATTTTGGGTTGGAGAAGTTCCCTTCTGTGGAGATTGATTGGGCGGCAATATGA 939 0.5091 MGTAIGMYSNNNIVPDFLDPYSEELMKALMPFMKSDYFSASSSSSSRESHPSPLIPSNSLPSSNQIRLNQLTQDQILQIQAQIHIQQQHVAQGQAHLGPKRVPMKHAGTAAKAAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDNAAFKLRGEFARLNFPHLRHHGAFVFGEFGDYRPLPSSVDSKLQAICESLAKQEEKPCCSVEDVKPVIHAAELAEVESDVAKLNAEYVYPEFEDFKVENENPMLSSSVSGESSSPESGVTFLDFSDFSDSNNQWDEMENFGLEKFPSVEIDWAAI 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01779 312 Pfam AP2 domain 117 166 IPR001471 GO:0003700|GO:0006355
Gma05g01779 312 SMART rav1_2 116 179 IPR001471 GO:0003700|GO:0006355
Gma05g01779 312 MobiDBLite consensus disorder prediction 40 61 - -
Gma05g01779 312 CDD AP2 115 175 IPR001471 GO:0003700|GO:0006355
Gma05g01779 312 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 61 - -
Gma05g01779 312 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 65 312 - -
Gma05g01779 312 Gene3D AP2/ERF domain 115 174 IPR036955 GO:0003700|GO:0006355
Gma05g01779 312 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Gma05g01779 312 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700|GO:0006355
Gma05g01779 312 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF060-LIKE 65 312 - -
Gma05g01779 312 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF060-LIKE 1 61 - -
Gma05g01779 312 ProSiteProfiles AP2/ERF domain profile. 116 173 IPR001471 GO:0003700|GO:0006355
Gma05g01779 312 SUPERFAMILY DNA-binding domain 116 174 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01779 Gma-Chr5 39402529 39404163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01779 4 312 AP2-EREBP Transcription Factor Family AT4G39780 49.359 9.56e-81 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma05g01779 AP2 2.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01779 K09286 - gmx:100797648 551.977