Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01748 ATGGAAGAGGAAGAGCACGAGGTGTACGGAGGAGAGATCCCTGACGAGGGAGAGATGGAAGGAGACATTGACATGTCCGCCGCCGACGATGACGCCGCCGTCAAGGAGCTCGACGAGATGAAGCGCCGATTGAAGGAAATGGAAGAGGAAGCCGCAGCGCTTCGCGAGATGCAAGCCAAGGTCGATAAGGAGATTGGCAGCGTTCAAGATCCTGCTAATTCAGCTGCTTCTCAGGCAAACAAGGAGGAGGCAGATTCTCGGTCTGTTTTTGTTGGCAATGTTGATTATGCATGCACACCAGAAGAAGTGCAGCAACACTTTCAGTCCTGTGGTACTGTAAACAGGGTCACTATCCTGACTGACAAGTTTGGCCAGCCTAAAGGTTTTGCTTATGTGGAATTTGTTGAAGCTGAGGCTGTTCAAGAGGCTCTCCTGTTAAATGAATCTGAATTGCATGGCCGTCAATTGAAGGTTTTGCCTAAGAGGACCAATGTTCCTGGAATGAAACAATATCGTCCTAGGCGCTTTAATCCTTACATGGCATATGGCTTCAGGAGGCCATATACTCCTCCTTACTTTTACTCCCCTTATGGATACGGGAAGGTTCCTAGGTTTCGAAGGCCAAATCGTTACATGCCGTACCACTAG 648 0.4907 MEEEEHEVYGGEIPDEGEMEGDIDMSAADDDAAVKELDEMKRRLKEMEEEAAALREMQAKVDKEIGSVQDPANSAASQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMAYGFRRPYTPPYFYSPYGYGKVPRFRRPNRYMPYH 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01748 215 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 1 213 - -
Gma05g01748 215 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 163 IPR000504 GO:0003723
Gma05g01748 215 Gene3D - 15 170 IPR012677 -
Gma05g01748 215 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 157 IPR000504 GO:0003723
Gma05g01748 215 MobiDBLite consensus disorder prediction 63 84 - -
Gma05g01748 215 CDD RRM_II_PABPs 88 159 - -
Gma05g01748 215 SUPERFAMILY RNA-binding domain, RBD 77 183 IPR035979 GO:0003676
Gma05g01748 215 SMART rrm1_1 88 159 IPR000504 GO:0003723
Gma05g01748 215 Coils Coil 30 64 - -
Gma05g01748 215 MobiDBLite consensus disorder prediction 1 23 - -
Gma05g01748 215 MobiDBLite consensus disorder prediction 70 84 - -
Gma05g01748 215 PANTHER - 1 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01748 Gma-Chr5 39132220 39136356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01748 84 158 Eukaryotic Initiation Factors Gene Family AT2G36660 34.211 2.76e-09 54.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01748 05 39132220 39136356 Gma08g01235 08 10504637 10509631 GST