Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01741 ATGAAGAGACTTGGCAGTTCGGATACACTGGGTGCTCTCATGACGATTTGTCCACCAACAGACGAACACAGTCCGAGGAACAACCACGTGTATGGGAAGGAGTTCCAGTCCATGCTGGAAGGACTCGACGAAGAAGGGTGCGTGGAAGAAGCAGGGCACCACTCTGAGAAGAAACGACGACTAAACGTAGATCAGGTGAAGGCCTTGGAGAAGAACTTCGAAGTAGAGAACAAACTGGAACCTGACCGAAAGGTGAAGCTCGCGCAAGAACTCGGCTTGCAACCAAGACAAGTTGCGGTTTGGTTCCAAAACCGCCGTGCCAGATGGAAAACAAAGCAATTGGAAAGAGATTACGGCGTCCTCAAAGCCAATTACGGATCACTTAAACTTAACTTTGACACCCTCCAACAAGACAACGAAGCCTTACTCAAACAGATAAAGGAATTGAAATCGAGGCTGGTGCAAGAAGAGAACAACAACAACACTGAAAGCGATGTTTCGGTGAAGGAAGAGATGATAGCCACTCTGCAGGATAGTAACCCGCTCTGTGAATCCGCCATTCCTGGATCGGACTCGAAGGAGTTGAGTTACGAGTGTTTCAACAAGAGTGATGAGGTGGGAGGGGGTTCTGTGTTCCCTGTGGATTTCAAAGATGGGTCTTCTGATAGCGACTCAAGTGCGATCTTGAACGAGGAGAACAACAACCACAGCCCCAACAACAACGCGGCGATTTCGTCGTGTGGGGTTCTGCAAAGTCACGGGCTTTTGTCGTCGCCTTCTTCTTCGTCGATGAACAACTGTTTCCAGTTCCAGAAACAGTACCAGACGACGACGCAGTACGTGAAGATGGAGGAGCACAATTTTCTCAGCGCCGACGAGGCCTGCAATTTCTTCTCGGACGAACAAGCACCAACTCTGCAGTGGTACTGTTCAGAGGAATGGAGTTAA 948 0.4937 MKRLGSSDTLGALMTICPPTDEHSPRNNHVYGKEFQSMLEGLDEEGCVEEAGHHSEKKRRLNVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYGSLKLNFDTLQQDNEALLKQIKELKSRLVQEENNNNTESDVSVKEEMIATLQDSNPLCESAIPGSDSKELSYECFNKSDEVGGGSVFPVDFKDGSSDSDSSAILNEENNNHSPNNNAAISSCGVLQSHGLLSSPSSSSMNNCFQFQKQYQTTTQYVKMEEHNFLSADEACNFFSDEQAPTLQWYCSEEWS 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01741 315 Coils Coil 132 166 - -
Gma05g01741 315 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 307 - -
Gma05g01741 315 Pfam Homeodomain 57 110 IPR001356 GO:0003677
Gma05g01741 315 Gene3D - 51 119 - -
Gma05g01741 315 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Gma05g01741 315 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 307 IPR045224 GO:0003700
Gma05g01741 315 CDD homeodomain 57 113 IPR001356 GO:0003677
Gma05g01741 315 Pfam Homeobox associated leucine zipper 112 153 IPR003106 GO:0006355|GO:0043565
Gma05g01741 315 SMART HOX_1 55 116 IPR001356 GO:0003677
Gma05g01741 315 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Gma05g01741 315 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Gma05g01741 315 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Gma05g01741 315 SUPERFAMILY Homeodomain-like 42 114 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01741 Gma-Chr5 39037549 39039873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01741 1 315 Homeobox Transcription Factor Family AT4G40060 47.774 9.04e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma05g01741 Homeodomain 7.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01741 K09338 - gmx:100796213 588.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01741 05 39037549 39039873 Gma08g01227 08 10410795 10412122 GST
Gma05g01741 05 39037549 39039873 Gma18g00137 18 1067762 1070457 PCT
Gma05g01741 05 39037549 39039873 Gma11g02438 11 39729730 39732360 PCT