Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01739 ATGGATCCTCATCTTCCTAAGAATGGAACCCAACAACACCATGGTACCCCAACACCTTCCCCAGCTTCAGTTGCAAATAATATTATAATACCACATCCTGAATTCCGGATACCTTCCTTTAAAGAACATCACAAAAATGTTCCTCAACTCGCGATGATTGTCATGGCATGCATGGTTGGCGTCATCATGTTTCTCTGCGCCGTGTCCGTACTCATAAGGTACTTCTACTCAAGAAGATATAGCCGCAATAACCAAAACAGAAGAGTCGACGCCCCCATATTGTTCGATTTGAACGGAGATTCTCCTCCGAGTTCGGATAACGATGATGACGTGGAGGAGTTGGCGGTTGTCCACCCGATATGGTACATCCGTACGGTGGGTCTCCAACAGTCCCTCATAGACTCCATCACGGTATTCAAATACAAGAAAGGCGAAGGCATCATAGACGGCACCGAGTGTTCGGTTTGCCTCGGAGAGTTCGAACACGACGAGAGTCTGAGGTTGTTGCCCAAGTGCAGCCACGCCTTCCACATCCCTTGCATTGACACGTGGCTCAGGTCTCACAAAAATTGCCCCTTGTGTCGTGCACCTGTGCTACGCGACGAAACTGACGGCGCGCATGTGATCAGAGCCGTTGATCAGAGTAATCAGACGGTTTCAAACGTTTCTGGTCATCAAGAGGCCCGCGTGGAGAGTTCTGATCATGAGAGGGTTGAAGATGATGATGTGTCTTCGGCCGCAGTGGAAGTGGTAGAGGCAACACAGCCTCTGAGAAGATCGGTTTCGATGGATTCTTCTTCTGCTAATTCAATGGTGTTATTTGGTGATGTGGTGGTGGATTTAGATACCCATCATTGTGGTGAAAAAGTGAATTATTCAAGTAATAAGGATATGAGTGTTGTTGTTAATGAGAAGCATGGTAGTGGGAGCTCAACTTCAACAACTATTATTAATAACAAGTTGGCTTCAATTGGACGTGCGTTGCAAAAGAGGCCGATCTCCGTCTCAATGAGAATGAGAAGATCTTTTTCACATAACACCAAGTTTTTGTTCTCCAGACACTGTAGGAGTCAGAGTTCAACTCTTCCATTGTAA 1095 0.463 MDPHLPKNGTQQHHGTPTPSPASVANNIIIPHPEFRIPSFKEHHKNVPQLAMIVMACMVGVIMFLCAVSVLIRYFYSRRYSRNNQNRRVDAPILFDLNGDSPPSSDNDDDVEELAVVHPIWYIRTVGLQQSLIDSITVFKYKKGEGIIDGTECSVCLGEFEHDESLRLLPKCSHAFHIPCIDTWLRSHKNCPLCRAPVLRDETDGAHVIRAVDQSNQTVSNVSGHQEARVESSDHERVEDDDVSSAAVEVVEATQPLRRSVSMDSSSANSMVLFGDVVVDLDTHHCGEKVNYSSNKDMSVVVNEKHGSGSSTSTTIINNKLASIGRALQKRPISVSMRMRRSFSHNTKFLFSRHCRSQSSTLPL 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01739 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 204 IPR013083 -
Gma05g01739 364 SUPERFAMILY RING/U-box 136 201 - -
Gma05g01739 364 MobiDBLite consensus disorder prediction 1 25 - -
Gma05g01739 364 CDD RING-H2_PA-TM-RING 152 195 - -
Gma05g01739 364 ProSiteProfiles Zinc finger RING-type profile. 153 195 IPR001841 -
Gma05g01739 364 PANTHER RING-H2 FINGER PROTEIN ATL54 24 356 - -
Gma05g01739 364 SMART ring_2 153 194 IPR001841 -
Gma05g01739 364 MobiDBLite consensus disorder prediction 228 244 - -
Gma05g01739 364 MobiDBLite consensus disorder prediction 217 246 - -
Gma05g01739 364 MobiDBLite consensus disorder prediction 9 25 - -
Gma05g01739 364 Pfam Ring finger domain 152 195 IPR001841 -
Gma05g01739 364 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 24 356 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01739 Gma-Chr5 39005535 39007143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01739 117 266 C3H Transcription Factor Family AT5G10380 50.625 3.11e-42 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01739 - - gmx:102663026 682.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01739 05 39005535 39007143 Gma18g00134 18 1034203 1035541 PCT