Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01724 ATGTTAGGAGAAGAGAGTAACAACAACAACAACGACCGCGGCGGCGGTCACCGGAGAACAACACATTCCCGATCAGTTTCCTGGACCGACCGGTCTCCGGTTACCCGGAAACCGCCGCGTCCGCTTCAGCCTCTCGCCATCAACAAACGCAGCGTTATGGAGTGGCCGAGCGCCGGCTGCGACGATCTCGGCGATTGGTCTCTTCCACCGACCCCAAGAGGTTCCACCATAACACCAGATTCGGGTTCGGGTAAAGTATTTCAATTCAAGAAAGACTATTATGCGTTCTACGACAAGGAATGTTCGAGAATCGCGGAGCACGTGTACCTGGGGAGTGACACGGTGGCGAAGAGCCAGGAGCTGCTGCGGCGGCACGGAATCACGCACGTGCTCAATTGCGTCGGGTTCGTGTGCCCCGAGTATTTCAAAACAGACTTCGTCTACAAAACGCTCTGGCTGCGGGACTCACCCTCGGAGGACATCACCAGCATTCTCTACGACGTTTTCGATTACTTTGAGGATGTCCGCCAACAGGGCGGGCGCATGTTCGTCCACTGCTGCCAGGGCGTCTCGCGGTCGACCTCGCTGGTCATCGCCTATCTCATGTGGAGGGAAGGCCAGAGCTTCGAGGACGCGTTCCACTACGTCAAGAACGCGCGTGGCGTCACGAACCCCAACATGGGCTTCGCGTGCCAGCTGTTGCAGTGTCAGAAGCGGGTGCACGCTATGCCTGCGAGTCCCAGTTCTGTTCTCAGGATGTATAGGATGGCTCCTCATTCTCCTTACGACCCTCTTCATCTTGTCCCTAAGTTGGTAGATCATCCTTCCCCTCGCGCGCTTGATTCGCGTGGCGCGTTTGTTGTGCACGTGCCCTCTGCTATATACGTGTGGATTGGGAAGGAGTGTGGCTCCGCAATGTGTTGCAATGCAAGATCAGCGGCTGCTCAGGTTGTTCGGTATGAGAGAGCAACGGGGGAGATTGTTAGTGTGGTTGAGGATGAAGAGCCGAAGGAGTTTTGGATTGCTCTTTCTACCAAGGAAGTGGTGGTGGAGATTATGGAGATTGATGTGGGGATTCGTCCCAGGAGAGTTGAGGAGTATGATTTAGATTATGGGATTTTTCATAAGGCGCTTGCTGGTGGGGTTGTTCCACCTTTTTCTTTGTCTAATGCTGGATCCGAAAATTGCCTTCCCGCTAGAGAAAATGGGTGGGGGAGATTGACTAGGAAGCTTGCTAGTGGTATCATGAAAGGCTTGTTTACATCCTCTAAGTGCTGTGAGTCTAGTGTGAACATCATTGAAGAGGGGAATCAACATATGAATGTTGATCCTCTTCCACCTTCTTCCAACAATGTGGGTGGTTCGCGGGGTTCCTTTGAGTGTTTTGGCTCGGAGAGGGGAAAGGATAATGTTCAAGTCAGGGATCAGTTTGTTGTCCCTAGTGTTGTTGGTTCATCAATGCCGCTGCCACCATCGCCTCATCATCGAGCATCCGATTCTTTTGCTTGTTTTCTAAGGAGCAGCCCCAAATTCAGTTCCAACTCCCCAACTCTGTCGCCCACCAGTTCGGATTATGCAAGTTCCTTTACATTTTCGCCTTCATCGACTGACTTGTCAATTGTGTCTTCTCGGCAGCTATCCCCTTCTGGTCTGGAATCAGCTGAACCCGCTCATGTGAAAGACGCATCTTCCTCAGAGTTTCGCTCCTTAGTTAAGAAAGAAGGTGAGACATTTCTGGCTAATCACACCTTGGTAGGAGCAAAGTCCAGTTTGCGGCGCAAAGGAACTTCCCTCTCCATTGCAGAGCGCAGAGGGAATAACCCCCCACCTCGCATGTTGCTACCCTCAGCCAGCGAATCATCCCGTGCCAGCAAGGTCCGGGTGCCAAAGGTTCTTCCATACAAATCAAAGAACAGTGCTGAACGAGTCAAGATTCCATTCTTCATCTACTTGGACTACTCTTCTATTTTAATACTGGCTATAAATTGA 1989 0.5178 MLGEESNNNNNDRGGGHRRTTHSRSVSWTDRSPVTRKPPRPLQPLAINKRSVMEWPSAGCDDLGDWSLPPTPRGSTITPDSGSGKVFQFKKDYYAFYDKECSRIAEHVYLGSDTVAKSQELLRRHGITHVLNCVGFVCPEYFKTDFVYKTLWLRDSPSEDITSILYDVFDYFEDVRQQGGRMFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFHYVKNARGVTNPNMGFACQLLQCQKRVHAMPASPSSVLRMYRMAPHSPYDPLHLVPKLVDHPSPRALDSRGAFVVHVPSAIYVWIGKECGSAMCCNARSAAAQVVRYERATGEIVSVVEDEEPKEFWIALSTKEVVVEIMEIDVGIRPRRVEEYDLDYGIFHKALAGGVVPPFSLSNAGSENCLPARENGWGRLTRKLASGIMKGLFTSSKCCESSVNIIEEGNQHMNVDPLPPSSNNVGGSRGSFECFGSERGKDNVQVRDQFVVPSVVGSSMPLPPSPHHRASDSFACFLRSSPKFSSNSPTLSPTSSDYASSFTFSPSSTDLSIVSSRQLSPSGLESAEPAHVKDASSSEFRSLVKKEGETFLANHTLVGAKSSLRRKGTSLSIAERRGNNPPPRMLLPSASESSRASKVRVPKVLPYKSKNSAERVKIPFFIYLDYSSILILAIN 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01724 662 CDD DSP 101 235 - -
Gma05g01724 662 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 33 619 - -
Gma05g01724 662 MobiDBLite consensus disorder prediction 595 621 - -
Gma05g01724 662 ProSiteProfiles Dual specificity protein phosphatase domain profile. 100 242 IPR020422 GO:0006470|GO:0008138
Gma05g01724 662 Pfam Dual specificity phosphatase, catalytic domain 108 238 IPR000340 GO:0008138|GO:0016311
Gma05g01724 662 Gene3D Protein tyrosine phosphatase superfamily 84 242 IPR029021 -
Gma05g01724 662 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 92 242 IPR029021 -
Gma05g01724 662 SMART dsp_5 100 239 IPR020422 GO:0006470|GO:0008138
Gma05g01724 662 MobiDBLite consensus disorder prediction 1 46 - -
Gma05g01724 662 SUPERFAMILY Actin depolymerizing proteins 246 347 - -
Gma05g01724 662 MobiDBLite consensus disorder prediction 11 25 - -
Gma05g01724 662 Gene3D Severin 252 349 IPR029006 -
Gma05g01724 662 PANTHER MKPA PROTEIN 33 619 - -
Gma05g01724 662 ProSitePatterns Tyrosine specific protein phosphatases active site. 184 194 IPR016130 GO:0016311|GO:0016791
Gma05g01724 662 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 159 220 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01724 Gma-Chr5 38890968 38894838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01724 41 136 Protein tyrosine phosphatase (PTP) family AT3G55270 47.273 1.20e-25 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01724 - - gmx:100782633 1258.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01724 05 38890968 38894838 Gma08g01210 08 10284415 10286790 GST
Gma05g01724 05 38890968 38894838 Gma18g00119 18 945978 947480 PCT
Gma05g01724 05 38890968 38894838 Gma11g02455 11 39856213 39859199 PCT