Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma05g01671 | ATGGAGATTCACTACAGTAACAGCTATTTCGAGAGGCGCCCCATCCTCAAGTCCAAGGCTGCCGCTGTCAAATGGGTCAAAGAATGGGTTCCCCAAGATCTTGTGACAACAGGAGGGAAGTGCATGATCTTAAAATGGGTAACAGAGGATACCTTGAAGACCTTGAAAGAAAAGGTAAAAGAGCCTTCAGTGCCAGAGCCAGAACCTGAGCCAACTACTGAAGTACTTTTTCTTTGCAGCTATGATGGCTGTGGAAAGACATTCATAGATGCTGGTGCATTGAGGAAACATTCTCACATCCATGGAGAGAGGCAGTATGTTTGTCACTACGATGGATGTGGAAAGAAATTTCTGGATAGCTCAAAGTTGAAAAGACATTTTCTCATTCATACAGGGGAGAGGGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCCTTCTCCCTGGATTTCAACTTAAGGTCTCACATGAAAACACATTCCCAAGAGAACTATCATATCTGCCCATATCCAGATTGTGGAAAGAGATATGCTCATGAATACAAGCTAAAGAATCACATTGCATCTCATCATGAAAAGAATGCATCCGTGGATGTGACAAAGTACACTACTCCCCCTTCAGAGAAGCAAACAAAAACTTCTAAACCATCTGGAGGGGCATATGGTTCTGCATCATCTGACCGTCCCTATGCATGTCCCTATGATGGGTGCGAAAAGGCATACATCCATGAATACAAGCTTAGACTCCATTTGAAGAGGGAGCATCCGGGGCTTATGGCTGATGAAAATGCAGAGCATGCTCAGGCTAATGTTGACAATGAAATGGATGAAGCAAGTGACCATGATGCCTATGTTGCGAAACGATCAAATGGTAAAATTCAGAAGCAGAATGAACCTTTCGATGAAGAAGATAGCGAAGAAACAGAAGAGGATCGTGACAATGTTGAAGATGGTTGGAGATATGCAGGAGGAAACAATGAAGATGATGATGAGGAAACAGAATATGAAGACTGA | 1014 | 0.432 | MEIHYSNSYFERRPILKSKAAAVKWVKEWVPQDLVTTGGKCMILKWVTEDTLKTLKEKVKEPSVPEPEPEPTTEVLFLCSYDGCGKTFIDAGALRKHSHIHGERQYVCHYDGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNASVDVTKYTTPPSEKQTKTSKPSGGAYGSASSDRPYACPYDGCEKAYIHEYKLRLHLKREHPGLMADENAEHAQANVDNEMDEASDHDAYVAKRSNGKIQKQNEPFDEEDSEETEEDRDNVEDGWRYAGGNNEDDDEETEYED | 337 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma05g01671 | 337 | Gene3D | Classic Zinc Finger | 203 | 273 | - | - | |
| Gma05g01671 | 337 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 79 | 101 | IPR013087 | - | |
| Gma05g01671 | 337 | Pfam | Zinc finger, C2H2 type | 136 | 160 | IPR013087 | - | |
| Gma05g01671 | 337 | Pfam | Zinc finger, C2H2 type | 166 | 190 | IPR013087 | - | |
| Gma05g01671 | 337 | PANTHER | BNAA03G13270D PROTEIN | 4 | 296 | - | - | |
| Gma05g01671 | 337 | MobiDBLite | consensus disorder prediction | 198 | 221 | - | - | |
| Gma05g01671 | 337 | SUPERFAMILY | beta-beta-alpha zinc fingers | 117 | 170 | IPR036236 | - | |
| Gma05g01671 | 337 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 166 | 195 | IPR013087 | - | |
| Gma05g01671 | 337 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 106 | 135 | IPR013087 | - | |
| Gma05g01671 | 337 | MobiDBLite | consensus disorder prediction | 275 | 337 | - | - | |
| Gma05g01671 | 337 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 230 | 260 | IPR013087 | - | |
| Gma05g01671 | 337 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 232 | 255 | IPR013087 | - | |
| Gma05g01671 | 337 | SMART | c2h2final6 | 136 | 160 | IPR013087 | - | |
| Gma05g01671 | 337 | SMART | c2h2final6 | 77 | 101 | IPR013087 | - | |
| Gma05g01671 | 337 | SMART | c2h2final6 | 166 | 190 | IPR013087 | - | |
| Gma05g01671 | 337 | SMART | c2h2final6 | 230 | 255 | IPR013087 | - | |
| Gma05g01671 | 337 | SMART | c2h2final6 | 106 | 130 | IPR013087 | - | |
| Gma05g01671 | 337 | Gene3D | Classic Zinc Finger | 103 | 133 | - | - | |
| Gma05g01671 | 337 | Gene3D | Classic Zinc Finger | 163 | 195 | - | - | |
| Gma05g01671 | 337 | MobiDBLite | consensus disorder prediction | 192 | 227 | - | - | |
| Gma05g01671 | 337 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 108 | 130 | IPR013087 | - | |
| Gma05g01671 | 337 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 136 | 165 | IPR013087 | - | |
| Gma05g01671 | 337 | Gene3D | Classic Zinc Finger | 134 | 161 | - | - | |
| Gma05g01671 | 337 | Gene3D | Classic Zinc Finger | 77 | 102 | - | - | |
| Gma05g01671 | 337 | SUPERFAMILY | beta-beta-alpha zinc fingers | 80 | 130 | IPR036236 | - | |
| Gma05g01671 | 337 | MobiDBLite | consensus disorder prediction | 275 | 299 | - | - | |
| Gma05g01671 | 337 | PANTHER | TRANSCRIPTIONAL REPRESSOR PROTEIN YY | 297 | 336 | - | - | |
| Gma05g01671 | 337 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 77 | 106 | IPR013087 | - | |
| Gma05g01671 | 337 | PANTHER | TRANSCRIPTIONAL REPRESSOR PROTEIN YY | 4 | 296 | - | - | |
| Gma05g01671 | 337 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 168 | 191 | IPR013087 | - | |
| Gma05g01671 | 337 | PANTHER | BNAA03G13270D PROTEIN | 297 | 336 | - | - | |
| Gma05g01671 | 337 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 138 | 160 | IPR013087 | - | |
| Gma05g01671 | 337 | SUPERFAMILY | beta-beta-alpha zinc fingers | 225 | 253 | IPR036236 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma05g01671 | Gma-Chr5 | 38445792 | 38450678 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gma05g01671 | 10 | 294 | C2H2 Transcription Factor Family | AT4G06634 | 69.048 | 8.15e-130 | 374 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Gma05g01671 | zf-C2H2 | 0.0078 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma05g01671 | - | - | gmx:100811480 | 635.18 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gma05g01671 | 05 | 38445792 | 38450678 | Gma05g01671 | 05 | 38445792 | 38450678 | ECH | |
| Gma05g01671 | 05 | 38445792 | 38450678 | Gma08g01159 | 08 | 9869932 | 9874192 | GST |