Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01656 ATGGCCCTGGGAAGTGCCACGTCGGAGGAGGAGGACATCGACGGCGAGGAGTCGGCGCTGTTGAAGAAGGATCGCATCTCCGGCGAGGAATGCGCCCCCGCCGgcgagagtgtctggaaggtgaggccgtggtccgacggccggagctccctggcggaggaagctccggcgagaatgagtggcacgaagacagcgagggcgaagGCAGTTGCTTCCTGCACCTCTCTGAGGACACTACTACCCTTCTTGTTACCCAGCACCCCATTGCGACGGCCACAATTCACCCACTGCTGCACTGCAAAGGTTTGGACAGTGTTACGTGCTTCACGAAACATGACCTCTGCTCACGACCTTACTGATAATGAAGATGATGGACAGCAGCAGTCAGAATCACCAATGCAGCCCCCATCTGTAAATGGAATATCTGATCCAGGTATTAGTACCCAGAATGTCAATGTACAGTATGCAGCACCTGGCCAGCTTGGAACTGGGCATGCAATGGTACCACATGTGTATCCATATCCAGATCCTTACTATAGAAGCATCTTTGCTCCCTATGATACACAACCTTATCCCCCACAAGCCTATAGTGGGCAGCCAATGGTCCATCTTCAGTTAATGGGAATTCAGCAAGCTGGTGTTCCTCTGCCAACTGATGCAGTTGAGGAGCCTGTGTTTGTCAATGCAAAACAATATCACGGTATATTAAGACGTAGACAATACCGTGCGAAAGCTGAATCAGAAAATAAAATTATAAGGAATAGGAAGCCATACTTGCATGAATCTCGACACAAGCATGCACTGACAAGACCAAGAGGATGTGGTGGTCGGTTTCTGAATTCAAAGAAAGACAAGAATCAGAATGATGATGTGGCATCAGCTGACAAATCACAATCCAATATCAATATCAATTCTAATAAAAATGATCAAACTTCATCAGATAGGGCATCCTAA 954 0.4193 MALGSATSEEEDIDGEESALLKKDRISGEECAPAGESVWKVRPWSDGRSSLAEEAPARMSGTKTARAKAVASCTSLRTLLPFLLPSTPLRRPQFTHCCTAKVWTVLRASRNMTSAHDLTDNEDDGQQQSESPMQPPSVNGISDPGISTQNVNVQYAAPGQLGTGHAMVPHVYPYPDPYYRSIFAPYDTQPYPPQAYSGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQYRAKAESENKIIRNRKPYLHESRHKHALTRPRGCGGRFLNSKKDKNQNDDVASADKSQSNININSNKNDQTSSDRAS 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01656 317 SMART cbf3 220 281 IPR001289 GO:0003700|GO:0006355
Gma05g01656 317 MobiDBLite consensus disorder prediction 292 317 - -
Gma05g01656 317 PRINTS CCAAT-binding transcription factor subunit B signature 224 246 IPR001289 GO:0003700|GO:0006355
Gma05g01656 317 PRINTS CCAAT-binding transcription factor subunit B signature 255 278 IPR001289 GO:0003700|GO:0006355
Gma05g01656 317 Gene3D - 221 282 - -
Gma05g01656 317 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 223 278 IPR001289 GO:0003700|GO:0006355
Gma05g01656 317 ProSitePatterns NF-YA/HAP2 subunit signature. 226 246 IPR018362 GO:0003677|GO:0016602
Gma05g01656 317 ProSiteProfiles NF-YA/HAP2 family profile. 221 281 IPR001289 GO:0003700|GO:0006355
Gma05g01656 317 MobiDBLite consensus disorder prediction 125 148 - -
Gma05g01656 317 MobiDBLite consensus disorder prediction 116 148 - -
Gma05g01656 317 MobiDBLite consensus disorder prediction 247 317 - -
Gma05g01656 317 MobiDBLite consensus disorder prediction 1 27 - -
Gma05g01656 317 MobiDBLite consensus disorder prediction 277 291 - -
Gma05g01656 317 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 112 300 IPR001289 GO:0003700|GO:0006355
Gma05g01656 317 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 112 300 - -
Gma05g01656 317 MobiDBLite consensus disorder prediction 257 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01656 Gma-Chr5 38244967 38255743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01656 113 317 CCAAT-HAP2 Transcription Factor Family AT1G30500 55.072 9.57e-69 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gma05g01656 CBFB_NFYA 5.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01656 K08064 - gmx:100805791 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01656 05 38244967 38255743 Gma08g01145 08 9664763 9668906 GST