Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01631 ATGGGAATTCAGGGGTTTTTGCCGCTATTGAAGTCGATTATGGTTCCAATCCACATTAAGGATCTGAAGGGTTGTTCTGTAGCCGTAGACACCTACTCTTGGCTCCACAAAGGTGCCCTCTCTTGCAGCACCGAACTCTGCAAAGGGATGCCCACTACCAGGCACATTGAGTATTGCATGCACAGAGTAAATTTGCTGCGCCATTTTGGGGTTAAGCCTATTCTAGTGTTTGATGGAGGGCTTCTGCCAATGAAGAGTGAACAAGAGAACAAGCGTGCCAGGGCTAGAAAGGATAATCTTGCACGTGCAGTTGAGCATGAGTCAGATGGAAATTCAGCTGCTGCTTATGAGTGCTACCAGAAAGCAGTTGATATTTCACCTCAAATTGCATGTGAACTAATTCAGGTATTGAAGCAGGAGAACTTGCAGTATATTGTTGCTCCTTACGAGGCAGATGCCCAGATGACATTCTTGGCAATTAGTGGACAAGTTGATGCAGTTATAACTGAAGACTCTGATCTTATACCATTTGGTTGCCCAAGAATTATCTTTAAAATGGACAAGTTTGGTCAAGGTGTTCAGTTTCAGGATTCCATGCTACAAAAGAATAAGGAGCTTAGTTTTGAAGGGTTCAACAGACAAATGCTTCTTGAAATGTGTATTTTGAGTGGCTGTGATTATCTGCAGTCCTTGTCAGGTATGGGTCTCAAAAGGGCCCATGCAAGCATTAAAAAATTTAGAAGTTATGACAAGGTTCTTAAGCACTTGAGATATAGTGGAGTTTCTGTGCCTCCCTTTTATGAAGAGTCATTCAAGAAGGCTATACTTACTTTCCAATATCAACGGGTTTATGATCCAATTAATGAAAATATTGTTCATTTGTCTAATATATCTGATGATATTGGTGATGAGTTAGACTTTTTAGGCCCAACCATGCCAAAAGATATAGCACAAAGAATAGCAAAAGGGGATCTTGATCCAATTACCAAAATGCCATTTGAGGTTTTGCTTCTCTTGAAGCAAAAAGGAAATTCAGAGCTCCTCGGGTGTCACCTACTGCTGCTAATGAAACAAAGAACTCTACTGCATATTGACTCTGAGAATTGGGGCAGTGTCCCTCCTCCTAATATCCATATTGGATATAGTTCTGCCACAAACAATTCTGAATTTACAGAGTCTCCATGTCATGAGAAGAAAAGCCCTGAACATACAGTACTGCGAAAGCCCAGGCAGCCAATTCATAAACCGTGTCTAGGGTTGCATGGGCACACAAACGTCCAAGACACAGCTGAAGGAAAAACCAGGGAGGAGGCAACAAGAAAGGTAACTGTAAGGAGTGCTTATTTTCAGCACAAGCAAGTGGAAAAGAATGTTTATGGCGAAAAACAAGATTGCCTGTCATCTGGCATTGCCATTGATGAGAGAAAAAATGCCTTATCTGAATAG 1446 0.4156 MGIQGFLPLLKSIMVPIHIKDLKGCSVAVDTYSWLHKGALSCSTELCKGMPTTRHIEYCMHRVNLLRHFGVKPILVFDGGLLPMKSEQENKRARARKDNLARAVEHESDGNSAAAYECYQKAVDISPQIACELIQVLKQENLQYIVAPYEADAQMTFLAISGQVDAVITEDSDLIPFGCPRIIFKMDKFGQGVQFQDSMLQKNKELSFEGFNRQMLLEMCILSGCDYLQSLSGMGLKRAHASIKKFRSYDKVLKHLRYSGVSVPPFYEESFKKAILTFQYQRVYDPINENIVHLSNISDDIGDELDFLGPTMPKDIAQRIAKGDLDPITKMPFEVLLLLKQKGNSELLGCHLLLLMKQRTLLHIDSENWGSVPPPNIHIGYSSATNNSEFTESPCHEKKSPEHTVLRKPRQPIHKPCLGLHGHTNVQDTAEGKTREEATRKVTVRSAYFQHKQVEKNVYGEKQDCLSSGIAIDERKNALSE 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01631 481 SMART xpgn3 1 99 IPR006085 GO:0004518
Gma05g01631 481 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 211 334 IPR036279 -
Gma05g01631 481 CDD PIN_EXO1 1 202 IPR044752 GO:0046872
Gma05g01631 481 Gene3D - 1 207 - -
Gma05g01631 481 ProSitePatterns XPG protein signature 1. 71 85 IPR019974 GO:0016788
Gma05g01631 481 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 455 IPR006084 -
Gma05g01631 481 SMART HhH_4 213 246 IPR008918 GO:0003677|GO:0003824
Gma05g01631 481 Pfam XPG I-region 142 226 IPR006086 GO:0004518
Gma05g01631 481 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Gma05g01631 481 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Gma05g01631 481 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 137 154 IPR006084 -
Gma05g01631 481 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 158 178 IPR006084 -
Gma05g01631 481 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 216 231 IPR006084 -
Gma05g01631 481 Pfam XPG N-terminal domain 1 98 IPR006085 GO:0004518
Gma05g01631 481 CDD H3TH_EXO1 214 285 IPR037315 GO:0003677|GO:0035312
Gma05g01631 481 SUPERFAMILY PIN domain-like 2 226 IPR029060 -
Gma05g01631 481 Gene3D - 209 281 - -
Gma05g01631 481 PANTHER EXONUCLEASE 1 1 455 IPR032641 GO:0006281|GO:0035312
Gma05g01631 481 SMART xpgineu 138 208 IPR006086 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01631 Gma-Chr5 38067314 38071928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01631 1 268 Core DNA Replication Machinery Family AT5G26680 26.761 1.06e-19 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01631 K10746 - gmx:100801178 976.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01631 05 38067314 38071928 Gma05g01631 05 38067314 38071928 ECH
Gma05g01631 05 38067314 38071928 Gma08g01114 08 9469901 9476016 GST