Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01627 ATGGCTCTTCCAAACCAATCCATGTCATCAGAGTCTCCCCAGAGAAAGATGGGAAGGGGGAAGATTGAGATCAAGAGGATTGAGAACACCACCAGTCGACAAGTTACCTTCTGCAAGCGCAGAAATGGTTTGCTCAAGAAGGCATATGAGTTATCTGTGCTTTGTGATGCAGAGGTTGCTCTAATTGTCTTTTCAAACCGTGGCCGCCTCTATGAATACGCTAATAACAGCGTCAAAGCTTCAATTGAGAGGTACAAGAAAGCAAGTTCAGATTTATCTACTGGTGGACAATCTGCTTCTGAGGCTAATGCTCAGTTTTACCACCAAGAAGCTGCCAAACTGCGTGTACAAATCAGCAATCTGCAGAATCACAATAGGCAAGTTGCATTAGGTTTGAGCACCATGAATGGCAAGGATCTCAAAAACCTAGAGACTAAATTAGAAAAAGGAATCAGCAGAATTCGTTCCAAGAAGAATGAGATGCTATTTGCAGAAATTGAGCACATGAAGAAGAGGGAGATACACTTGAACAATGACAATCAGCTTCTTAGAGCAAAGATAGCAGCAGGTGAGAGGAGTCACCATAATGTTAACGGGTTGTCTGGAAGCATAAGCTATGAATCGATGCAATCTCAGTTTGACTCCCGCGGCTTCTTCCAAGTAACTGGATTACAACCTAATAATAATCAGTATGCCGGACAAGACAACATGTCCCTTCAATTTGTTTGA 729 0.4252 MALPNQSMSSESPQRKMGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYANNSVKASIERYKKASSDLSTGGQSASEANAQFYHQEAAKLRVQISNLQNHNRQVALGLSTMNGKDLKNLETKLEKGISRIRSKKNEMLFAEIEHMKKREIHLNNDNQLLRAKIAAGERSHHNVNGLSGSISYESMQSQFDSRGFFQVTGLQPNNNQYAGQDNMSLQFV 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01627 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Gma05g01627 242 Pfam K-box region 101 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma05g01627 242 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Gma05g01627 242 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Gma05g01627 242 Gene3D - 29 96 IPR036879 GO:0003677|GO:0046983
Gma05g01627 242 PANTHER AGAMOUSB 11 236 - -
Gma05g01627 242 PANTHER MADS BOX PROTEIN 11 236 - -
Gma05g01627 242 CDD MADS_MEF2_like 18 91 IPR033896 GO:0000977|GO:0045944
Gma05g01627 242 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Gma05g01627 242 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Gma05g01627 242 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Gma05g01627 242 Coils Coil 104 124 - -
Gma05g01627 242 Coils Coil 140 160 - -
Gma05g01627 242 MobiDBLite consensus disorder prediction 1 21 - -
Gma05g01627 242 SUPERFAMILY SRF-like 18 89 IPR036879 GO:0003677|GO:0046983
Gma05g01627 242 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Gma05g01627 242 ProSiteProfiles K-box domain profile. 104 193 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01627 Gma-Chr5 38020829 38028261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01627 15 242 MADS-box Gene Family AT3G58780 61.181 4.84e-93 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma05g01627 K-box 3.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01627 K09264 - gmx:100800107 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01627 05 38020829 38028261 Gma05g01627 05 38020829 38028261 ECH
Gma05g01627 05 38020829 38028261 Gma08g01112 08 9430117 9437088 GST
Gma05g01627 05 38020829 38028261 Gma15g00837 15 6892176 6902726 PCT
Gma05g01627 05 38020829 38028261 Gma13g01971 13 35010181 35018995 PCT
Gma15g00837 15 6892176 6902726 Gma05g01627 05 38020829 38028261 PCT
Gma13g01971 13 35010181 35018995 Gma05g01627 05 38020829 38028261 PCT