Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01619 ATGGATGAGAATTCAGCAACAAATGGAACCCATGAGGTGGTTTTAGATGTAAACAGGGACGTCTCTAGAACAACTCAAGCTTCACGCTCTTGTGTCAATGTTTCTTTCTTGCAGAAGTTGGTAGCTGAGGTGGTAGGCACGTATTTCTTGATATTTGCAGGGAGTGCTTCTGTGGTGGTGAACAAGAACAACAACAACGTTGTAACACTTCCTGGGATATCAATTGTTTGGGGACTGGTTGTGATGGTGCTGGTTTACTCTGTTGGTCACATCTCTGGTGCCCATTTCAATCCTGCTGTCACCATTGCTTTTGCCTCCACCAAAAGGTTTCCCTTGAAGCAGGTTCCAGTTTATGTGGTGGCTCAGGTTGTTGGATCCACACTTGCAAGTGGGACTCTCAGACTATTATTTAGTGGCAAAGAAGCCCAGTTTTCAGGAACACTTCCATCTGGGTCCAACCTGCAAGCTTTTGTGATTGAATTCTTAATCACTTTTTTCCTTATGTTTGTCGTATCCGGGGTTGCCACTGATAACAGAGCGATCGGTGAGTTGGCCGGGATTGCCGTTGGGTCTACTGTGCTGTTGAATGTGATGTTTGCAGGGCCAATCACAGGAGCATCAATGAACCCAGCAAGAAGCATAGGGCCAGCGATTGTACACAAGGAATACCGAGGAATATGGATATATTTAGTGTCTCCAACTCTTGGGGCTGTGGCCGGCGCATGGGTCTACAATAGTATTCGTTACACGGACAAGCCACTGCGTGAGATCACCAAGAGTGCCTCTTTCCTTAAAGGAGTAGCCTCTAGGTGA 813 0.4662 MDENSATNGTHEVVLDVNRDVSRTTQASRSCVNVSFLQKLVAEVVGTYFLIFAGSASVVVNKNNNNVVTLPGISIVWGLVVMVLVYSVGHISGAHFNPAVTIAFASTKRFPLKQVPVYVVAQVVGSTLASGTLRLLFSGKEAQFSGTLPSGSNLQAFVIEFLITFFLMFVVSGVATDNRAIGELAGIAVGSTVLLNVMFAGPITGASMNPARSIGPAIVHKEYRGIWIYLVSPTLGAVAGAWVYNSIRYTDKPLREITKSASFLKGVASR 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01619 270 Gene3D Glycerol uptake facilitator protein. 2 258 IPR023271 -
Gma05g01619 270 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 268 - -
Gma05g01619 270 CDD MIP 38 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma05g01619 270 SUPERFAMILY Aquaporin-like 32 258 IPR023271 -
Gma05g01619 270 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma05g01619 270 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma05g01619 270 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma05g01619 270 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma05g01619 270 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma05g01619 270 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma05g01619 270 PANTHER AQUAPORIN NIP2-1 1 268 IPR034294 -
Gma05g01619 270 Pfam Major intrinsic protein 33 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma05g01619 270 TIGRFAM MIP: MIP family channel proteins 42 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma05g01619 270 ProSitePatterns MIP family signature. 95 103 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01619 Gma-Chr5 37959722 37962156 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01619 34 270 Major Intrinsic Protein MIP AT5G37820 62.025 5.99e-105 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01619 K09874 - gmx:100798526 508.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01619 05 37959722 37962156 Gma05g01619 05 37959722 37962156 ECH
Gma05g01619 05 37959722 37962156 Gma08g01106 08 9388473 9391022 GST
Gma05g01619 05 37959722 37962156 Gma15g00825 15 6787700 6790142 PCT
Gma15g00825 15 6787700 6790142 Gma05g01619 05 37959722 37962156 PCT