LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma05g01616	ATGGATGATGCACAGGGTAGTTCAAGTTCCCTGCCCCCTTTCCTGGCAAAGACTTATGAGATGGTGGATGATCCTTCCACGGATTCGGTTGTTTCGTGGAGTATCACTAGCAAGAGTTTCATTGTATGGAATCCCCCAGAATTTGCCAGGGATTTGCTGCCTAGATTCTTTAAGCACAACAACTTCTCAAGTTTCATCAGGCAGCTGAACACATATGGATTTAGAAAAGTTGACCCAGAACAATGGGAATTTGCCAATGATGATTTTGTTAGAGGGCAGCCTCATCTTATGAAGAACATCCATAGACGGAAGCCGGTTCATAGCCATTCTTTGCAGAATCTCCAAGCACAAGGCCCAATAGGGGAGGCAGAAAGGCAGAGTTTTACTGATGAAATAGAGAAGCTTAAACACGATAAAGAGCAACTCCTCGTGGAATTACAGAAATATCAGCATGAGTGGCAGGCATATGAGATACAAATGCATTCCTCAAAAGATCGGTTGGAAAAGTTGGAACAGAATCAACAAAAGATGGTTTCTTCTGTTTCTCATGTATTGCAGAAACCTGTGATTTCTGTAAATATCTTGCCTCTGACAGAAACCATGGATAGAAAGCGAAGGTTGCCGAGAAGTGGCCACTTTTATGATGAAGCTAGCGTTGAAGATGCTATGGAAACTTCCCAAATGTTACCAAGAGAAAATGCAGACAATACCACTGTCTTGACGTTAAATGTGGAGCGACTGGATCAGCTTGAATCATCCATGGCATTTTGGGAGGCTATTGTACATGATATTGGTGACACCTTCGTCCAAATTCAGTCAAACATGGATTTTGATGAATCTACAAGTTGTGCTGATAGTCCATCTATATCTTGTGCACAATTAGATGTTGAAGTTCGGCCTAAGTCACCTGGAATTGACATGAACTCTGAGCCAACTACAGCTGCTGTTCCTGAGCCTGTTGCATCAAAAGAACAACCTGCAGGAACCACTGTTGCAGCAACTGGTGTTAATGATGTATTCTGGGAGCAGTTCTTGACTGAGGATCCTGGTGCATCAGAAACACAGGAAGTGCAGTCAGAAAGAAAGGAATATGATGGCAGAAAGAATGAAGGAAAACCCAGCGACCTTAACAAATTTTGGTGGAACAAATGGAATGCAAATAATCTTCCAGAACAGATGGGGCATGTTGGTCAAGCAGAGAAAACATAG	1209	0.426	MDDAQGSSSSLPPFLAKTYEMVDDPSTDSVVSWSITSKSFIVWNPPEFARDLLPRFFKHNNFSSFIRQLNTYGFRKVDPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSLQNLQAQGPIGEAERQSFTDEIEKLKHDKEQLLVELQKYQHEWQAYEIQMHSSKDRLEKLEQNQQKMVSSVSHVLQKPVISVNILPLTETMDRKRRLPRSGHFYDEASVEDAMETSQMLPRENADNTTVLTLNVERLDQLESSMAFWEAIVHDIGDTFVQIQSNMDFDESTSCADSPSISCAQLDVEVRPKSPGIDMNSEPTTAAVPEPVASKEQPAGTTVAATGVNDVFWEQFLTEDPGASETQEVQSERKEYDGRKNEGKPSDLNKFWWNKWNANNLPEQMGHVGQAEKT	402

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma05g01616	402	MobiDBLite	consensus disorder prediction	354	374	-	-
	Gma05g01616	402	MobiDBLite	consensus disorder prediction	346	376	-	-
	Gma05g01616	402	Pfam	HSF-type DNA-binding	14	103	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gma05g01616	402	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	1	383	IPR027725	-
	Gma05g01616	402	Coils	Coil	125	173	-	-
	Gma05g01616	402	Gene3D	-	6	104	IPR036388	-
	Gma05g01616	402	ProSitePatterns	HSF-type DNA-binding domain signature.	53	77	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gma05g01616	402	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR A-4C	1	383	-	-
	Gma05g01616	402	PRINTS	Heat shock factor (HSF) domain signature	14	37	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gma05g01616	402	PRINTS	Heat shock factor (HSF) domain signature	52	64	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gma05g01616	402	PRINTS	Heat shock factor (HSF) domain signature	65	77	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gma05g01616	402	SUPERFAMILY	"Winged helix" DNA-binding domain	9	103	IPR036390	-
	Gma05g01616	402	MobiDBLite	consensus disorder prediction	303	326	-	-
	Gma05g01616	402	SMART	hsfneu3	10	103	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma05g01616	Gma-Chr5	37933853	37935181	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma05g01616	7	402	HSF	AT4G18880	53.071	1.08e-126	369

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Gma05g01616		HSF_DNA-bind	3.2e-31	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma05g01616	K09419		-	gmx:100798004	814.683

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma05g01616	05	37933853	37935181	Gma05g01616	05	37933853	37935181	ECH
	Gma05g01616	05	37933853	37935181	Gma08g01103	08	9362657	9363987	ECH
	Gma05g01616	05	37933853	37935181	Gma08g01103	08	9362657	9363987	GST
	Gma05g01616	05	37933853	37935181	Gma15g00815	15	6717753	6719921	PCT
	Gma05g01616	05	37933853	37935181	Gma13g01995	13	35225478	35226788	PCT
	Gma15g00815	15	6717753	6719921	Gma05g01616	05	37933853	37935181	PCT
	Gma13g01995	13	35225478	35226788	Gma05g01616	05	37933853	37935181	PCT