Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01614 ATGGCTTCGGCGGCCATATTCTCGTCGCTACGGCGGCGCCGGTCTCCGTCGCTGGAGGCGTTTCTGGTGCCGGTCGACCTCTCCGACGTGGCGCTGCTGGAGACTCTTATCTCCGTCGCCAGCGACGTCGCGTCCTGCTTCTCCGGCCACCGGTTCCCCTTCCAGCGCCGGAACTCGCGTGCCCTCATCGGAAAAGTTGAGATTTTCCGGTCAATGTTGGAGTGTCTGAGAGACTCCGCTGCCGCCGGAGCTCTTACTCCGACGGCGGTGCTGTGCTTAAAGGAGTTCTACCTGCTTCTATATCGCTCAAAGATTCTTCTTGATTACTGTGCCCAATCGAGCAAGTTGTGGCTGCTGCTTCAGAACCATTGTGTTTCTGGTCACTTCCATGATCTGAGCCAAGAATTTTCGACCCTTTTGGATGTTTTTCCCGTTGGGGAAGTTGGCCTCAGTGATGATGTTAGGGAACAGATTGAGTTGTTGCAGAGACAATCCAAAAGGGCTAAGTTGTTCATAGATAAGAAAGATGATGTTCTTAGGACAAGGTTCTTTTGGTTTCTCGAAGAGTTTGAGAGTGGGAGGGTTCCTGATTCTAAGGACTTGAGGTGTTTCTTTGTGGATAAACTGAGGATTCTTGATGCTAAGAGTTGTAGGGTGGAGATTGAAGCCTTGGAGGAGCAGATTGTGAACCACGAGGGTGATGTTGAGCCAACGGTTCCTGTGCTTAATGGGATGGTGGCTATCACAAGGTATTGCAGGTTTTTGTTGTTTGGGTTTGAGGAAGAGTTGGAAATTGAGATTCAAAAGAAGGGGAGGAAGAGGTTGATTGCTCAGGAAATTGCTGAAACGTTTTTGACTGTTCCTAAGGACTTTTGTTGTCCGATATCATTGGATTTGATGTGTGATCCTGTGATAATTTCCACGGGTCAAACTTATGATAGGAGGTCTATATGGAGGTGGATGGAGGAAGGGCATTGTACTTGTCCAAAAACGGGGCAATTGCTTTCTCATAATAGGCTTGTTCCTAATCGTGCTCTTAGGAATATGATTATGCAGTGGTGCAGTGCACATGGAGTACCCTATGATCCACCTGAGGGGGTTGATGCATCTGTTGAGATGTTTGTATCAGCTTGTCCCTCCAAAGCTTCCCTCGAAGCTAACCGAGGGGCGACCACGCTTCTCATTCAGCAGCTTGCGGATGGGTCACAAGCTGCACAGACTGTGGCTGCTAGGGAGATAAGATTGTTGGCCAAAACTGGAAAGGAAAACCGTGCCTTCATCGCGCAGGCCGGGGCAATTCCTCATCTTAGGAACTTGCTTTCCTCACCTAATGCTGTTGCACAGGAGAATTCTGTGACAGCACTGCTCAACCTATCCATTTTTGAAAGAAATAAAAGCATGATCATGGAGGAGGAAGGGTGTTTGGGGTCAATAGTTGAGGTGTTGCGATTCGGGCATACAACTGAGGCAAGGGAGAATGCTGCTGCAACATTGTTCAGCCTCTCTGCTGTCCATGATTATAAGAAAAGAATTGCGGATAATGTGGGGGCTGTTGAAGCACTGGCTTGGTTGTTGCAAGAGGGGACTCAAAGAGGAAAGAAGGATGCTGTCACAGCATTGTTTAACCTCTCCACTCACACTGAGAATTGTTTGAGAATGATAGAGGCAGGGGCGGTGAAAGCTATGGTTGTGGCTTTGGGGAATGAAGGAGTTGCTGAGGAAGCAGCTGGTGCCTTGGCCTTGATTGTTCGGCAGCCTGTTGGCGCCATGGCGGTGGTGAGGGAGGAAGCAGCAGTAGCCGGATTGATAGGAATGATGCGTTGTGGAACGCCGAGAGGTAAAGAGAATGCAGTTGCAGCATTGTTGGAGCTGTGCAGGAGTGGAGGTGCAGCTGCAACTGAAAGAGTGGTTAGGGCGCCGGCTTTGGTTGGATTGCTTCAAACCTTGCTCTTTACAGGTACAAAGAGGGCAAGAAGAAAGGCAGCTTCACTAGCTAGAGTGTTTCAGAGATGTGAAAATGCATCTCTCCATTATGGTGGATTAGGTGTAGGTTATTCATTTGCTAGCGATTCAGCTTCAACCAGAAATACTACAACCTTTGTGAGTGACGTTTCACTTCCAATGTCCATTTCTGTTCCTGTTTTATAG 2148 0.487 MASAAIFSSLRRRRSPSLEAFLVPVDLSDVALLETLISVASDVASCFSGHRFPFQRRNSRALIGKVEIFRSMLECLRDSAAAGALTPTAVLCLKEFYLLLYRSKILLDYCAQSSKLWLLLQNHCVSGHFHDLSQEFSTLLDVFPVGEVGLSDDVREQIELLQRQSKRAKLFIDKKDDVLRTRFFWFLEEFESGRVPDSKDLRCFFVDKLRILDAKSCRVEIEALEEQIVNHEGDVEPTVPVLNGMVAITRYCRFLLFGFEEELEIEIQKKGRKRLIAQEIAETFLTVPKDFCCPISLDLMCDPVIISTGQTYDRRSIWRWMEEGHCTCPKTGQLLSHNRLVPNRALRNMIMQWCSAHGVPYDPPEGVDASVEMFVSACPSKASLEANRGATTLLIQQLADGSQAAQTVAAREIRLLAKTGKENRAFIAQAGAIPHLRNLLSSPNAVAQENSVTALLNLSIFERNKSMIMEEEGCLGSIVEVLRFGHTTEARENAAATLFSLSAVHDYKKRIADNVGAVEALAWLLQEGTQRGKKDAVTALFNLSTHTENCLRMIEAGAVKAMVVALGNEGVAEEAAGALALIVRQPVGAMAVVREEAAVAGLIGMMRCGTPRGKENAVAALLELCRSGGAAATERVVRAPALVGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYSFASDSASTRNTTTFVSDVSLPMSISVPVL 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01614 715 Pfam Armadillo/beta-catenin-like repeat 421 459 IPR000225 GO:0005515
Gma05g01614 715 Pfam U-box domain 287 357 IPR003613 GO:0004842|GO:0016567
Gma05g01614 715 Coils Coil 214 234 - -
Gma05g01614 715 SMART Ubox_2 290 353 IPR003613 GO:0004842|GO:0016567
Gma05g01614 715 Gene3D - 391 666 IPR011989 -
Gma05g01614 715 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 11 692 - -
Gma05g01614 715 SUPERFAMILY RING/U-box 276 361 - -
Gma05g01614 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 361 IPR013083 -
Gma05g01614 715 CDD RING-Ubox_PUB 291 333 IPR045210 -
Gma05g01614 715 PANTHER U BOX DOMAIN-CONTAINING 11 692 - -
Gma05g01614 715 SMART arm_5 505 545 IPR000225 GO:0005515
Gma05g01614 715 SMART arm_5 546 584 IPR000225 GO:0005515
Gma05g01614 715 SMART arm_5 462 503 IPR000225 GO:0005515
Gma05g01614 715 SMART arm_5 420 460 IPR000225 GO:0005515
Gma05g01614 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 516 558 IPR000225 GO:0005515
Gma05g01614 715 SUPERFAMILY ARM repeat 387 668 IPR016024 -
Gma05g01614 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 431 473 IPR000225 GO:0005515
Gma05g01614 715 ProSiteProfiles U-box domain profile. 286 360 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01614 Gma-Chr5 37913399 37916086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01614 1 715 U-box Gene Family AT1G29340 68.707 0.0 923
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01614 - - gmx:100797462 1345.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01614 05 37913399 37916086 Gma05g01614 05 37913399 37916086 ECH
Gma05g01614 05 37913399 37916086 Gma08g01101 08 9347126 9350527 GST
Gma05g01614 05 37913399 37916086 Gma15g00813 15 6698931 6701731 PCT
Gma05g01614 05 37913399 37916086 Gma13g01997 13 35246788 35249540 PCT
Gma15g00813 15 6698931 6701731 Gma05g01614 05 37913399 37916086 PCT
Gma13g01997 13 35246788 35249540 Gma05g01614 05 37913399 37916086 PCT