Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01548 ATGGCAGGCGTTTCTCTCAAGTGCGGTGACTGCGGTGCTCTGTTGAGAACCGTAGAAGAAGCGCAAGAGCACGCCGAACTCACTTCCCACTCCAACTTCTCCGAGTCCACCGAACCGGTTCTCAACCTCATCTGCTCCGTTTGCTCCAAACCCTGCCGATCCAAAACCGAGAGTGATTTGCACACGAAAAGAACCGGCCACACCGAGTTCGTTGACAAGACTTCCGAGGCCGTCAAACCGATTAGTTTGGAGGCTCCGAAGGTGGATGCAACTGCTTCGTCGGAAAACCCTTCCGCTGCTGCATCCACTGACAAAAATGAAGAAATGGTTGTTCCCGAAGTGGACAAGAAGCTGCTCAAGGAACTTGAATCCATGGGGTTTTCAACGGCACGGGCAACGCGGGCGCTTCATTACTCTGGTAATGCTGGCCTTGAGTCTGCTGTAAATTGGATAGTAGAGCACGAGAATGATCCTGACATAGATCAGATGCCCTTGGTACCCGCCAACACCAAAATTGAGGCTCCTAAACCTTTGCTTACCCCAGAAGAAATGAAGGCCAAACAGCAGGAACTAAGGGAGAGAGCTCGTAagaagaaagaagaggaagagaagagaatggagagagaaagagaaaagGAGAGAATTCGCATTGGCAAGGAGTTGCTGGAAGCAAAGCGGATTGAAGAAGAGAATGAGAGGAAACGTTTGTTGGCCTTGAAAAAAGTAGAGAAAGAGGAAGAGAAAAGGGCTAGGGAGAAAATCAAGAAAAAGTTGGAAGAAGACAAGGCAGAAAGAAGGCGGAGACTTGGATTGCCTCCAGAGGAACCCTCAGCAGCCAAACCTTCACCTGCGCCTATTGTGGAGGAGAAAAAGAGTTTTGTGCCTGTTAGGCCTGCCACAAAAGCTGAGCAAATGAGGGAGTGCCTCCGTTCTCTCAAGCAGAACCACAAGGAGGATGACGCTAGAGTGAAGAGAGCATTCCAAACTCTTCTAACTTATGTAGGGAATGTTGCCAGAAATCCCGATGAAGAAAAGTTCAGGAAGATACGTCTTAGTAACCAATCTTTTCAGGACAGAGTTGGTTCCTTGAAAGGGGGCATTGAATTTCTAGAAATTTGTGGGTTTGAGAAGATCGATGGTGGTGAGTTTTTGTTTTTGCCTAGGGACAAAGTTGAAATGGCGGTCCTGAATTCAGCTGGATCTGAACTAGACTCTGCAATAAAGAATCCATTTTTTGGAGTTCTTTAG 1248 0.4615 MAGVSLKCGDCGALLRTVEEAQEHAELTSHSNFSESTEPVLNLICSVCSKPCRSKTESDLHTKRTGHTEFVDKTSEAVKPISLEAPKVDATASSENPSAAASTDKNEEMVVPEVDKKLLKELESMGFSTARATRALHYSGNAGLESAVNWIVEHENDPDIDQMPLVPANTKIEAPKPLLTPEEMKAKQQELRERARKKKEEEEKRMEREREKERIRIGKELLEAKRIEEENERKRLLALKKVEKEEEKRAREKIKKKLEEDKAERRRRLGLPPEEPSAAKPSPAPIVEEKKSFVPVRPATKAEQMRECLRSLKQNHKEDDARVKRAFQTLLTYVGNVARNPDEEKFRKIRLSNQSFQDRVGSLKGGIEFLEICGFEKIDGGEFLFLPRDKVEMAVLNSAGSELDSAIKNPFFGVL 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01548 415 Pfam PUB domain 322 392 IPR018997 -
Gma05g01548 415 MobiDBLite consensus disorder prediction 89 103 - -
Gma05g01548 415 Pfam UBA/TS-N domain 119 151 IPR015940 -
Gma05g01548 415 PANTHER F13M7.16 PROTEIN 1 415 - -
Gma05g01548 415 SMART PGNneu 325 388 - -
Gma05g01548 415 CDD UBA_PUB_plant 113 161 - -
Gma05g01548 415 MobiDBLite consensus disorder prediction 83 108 - -
Gma05g01548 415 MobiDBLite consensus disorder prediction 187 211 - -
Gma05g01548 415 PANTHER F13M7.16 PROTEIN 1 415 - -
Gma05g01548 415 Coils Coil 219 264 - -
Gma05g01548 415 CDD PUB_UBA_plant 309 415 - -
Gma05g01548 415 SUPERFAMILY PUG domain-like 296 411 IPR036339 -
Gma05g01548 415 SMART uba_6 115 153 IPR015940 -
Gma05g01548 415 Gene3D - 115 161 - -
Gma05g01548 415 Gene3D - 307 405 - -
Gma05g01548 415 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 113 154 IPR015940 -
Gma05g01548 415 Coils Coil 184 216 - -
Gma05g01548 415 MobiDBLite consensus disorder prediction 258 300 - -
Gma05g01548 415 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Gma05g01548 415 MobiDBLite consensus disorder prediction 258 273 - -
Gma05g01548 415 SUPERFAMILY UBA-like 101 167 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01548 Gma-Chr5 37316522 37326259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01548 98 415 C2H2 Transcription Factor Family AT1G04850 77.500 7.30e-152 431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01548 05 37316522 37326259 Gma05g01548 05 37316522 37326259 ECH