Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01536 ATGCAGTGTTATGGCTTAACCGTACCGGGAAGCGTGCCCACCGTATCTCCAGTGTTCTTGAGGCCCAACAGGCCCATTATCGCGACCCGAATCGCGTTTCCCAAGGCGACCCTGAATAAGAACCAGGGCTTCGTGGTGGAGCTGAGCTTCTACGAGCTTCTGGGCATACCCGAATCGGTTTCGGTAACGGAGATCAAGAACGCCTACAAGCAACTCGCCCGAAAGTACCACCCTGACGTGTCGCCACCGGGTCGGGTCGAAGAGTACACCAAGAGGTTTATTCAGGTGCAGGAGGCCTACGAAACCTTATCTGATCCTTCCCGAAGAGCTATGTACGATAAGGACATGGCCAGGGGCATTAACTTGGCCTTCAACGCTCGTCGACGCTATAATTATCACGATCAGGTGGTTGAACAAAAAAGTGAATGGAAAGTCAGGTGGAAATCTCAACTGTCAGAGCTGAAGAGAAGAAGTAACAGCAAGGATGTTGGAGGGAATATGTCATGGGCAGCACGAATGCGCCAGCAGAGGGATGAATTGTCAAATGAATCATGA 555 0.5135 MQCYGLTVPGSVPTVSPVFLRPNRPIIATRIAFPKATLNKNQGFVVELSFYELLGIPESVSVTEIKNAYKQLARKYHPDVSPPGRVEEYTKRFIQVQEAYETLSDPSRRAMYDKDMARGINLAFNARRRYNYHDQVVEQKSEWKVRWKSQLSELKRRSNSKDVGGNMSWAARMRQQRDELSNES 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01536 184 ProSitePatterns Nt-dnaJ domain signature. 93 112 IPR018253 -
Gma05g01536 184 Gene3D DnaJ domain 37 145 IPR036869 -
Gma05g01536 184 PRINTS DnaJ domain signature 51 69 IPR001623 -
Gma05g01536 184 PRINTS DnaJ domain signature 69 84 IPR001623 -
Gma05g01536 184 PRINTS DnaJ domain signature 88 108 IPR001623 -
Gma05g01536 184 PRINTS DnaJ domain signature 108 127 IPR001623 -
Gma05g01536 184 MobiDBLite consensus disorder prediction 155 184 - -
Gma05g01536 184 CDD DnaJ 50 105 IPR001623 -
Gma05g01536 184 SMART dnaj_3 48 108 IPR001623 -
Gma05g01536 184 Coils Coil 170 184 - -
Gma05g01536 184 Pfam DnaJ domain 50 113 IPR001623 -
Gma05g01536 184 ProSiteProfiles dnaJ domain profile. 49 116 IPR001623 -
Gma05g01536 184 SUPERFAMILY Chaperone J-domain 48 122 IPR036869 -
Gma05g01536 184 PANTHER CHAPERONE PROTEIN DNAJ 20, CHLOROPLASTIC 44 181 - -
Gma05g01536 184 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 44 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01536 Gma-Chr5 37217747 37220309 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01536 51 113 C2H2 Transcription Factor Family AT1G74250 45.455 5.25e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01536 - - gmx:100819682 367.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01536 05 37217747 37220309 Gma05g01536 05 37217747 37220309 ECH