LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma05g01498	ATGGGAAGGGGAAGAGTGGAGTTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAACGAAGGAACGGGCTTTTGAAGAAAGCTTACGAGCTTTCCGTTCTTTGTGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTCTGCAGCAGTTCAAGCATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGAGGCTAATGTGTCTACACGGGAAGCCTTGGTAATGGAGTTAAGCAGTCAACAGGAGTACTTGAAGCTGAAGGCACGTTATGAGGCCCTACAACGGTCCCAGAGGAACCTTATGGGAGAAGATCTTGGTCCTTTAAGCAGCAAAGAGCTCGAGTCTCTTGAAAGGCAGCTAGATTCGTCCTTGAAGCAAATAAGATCAACCAGGACCCAGTTCATGTTGGATCAGCTCTCTGATCTTCAACGTAAGGAACACTTGCTAAGTGAGGCTAACAGGTCTCTCAGACAAAGGCAGTTGGAAGGGTATCAAATAAATCCACTCCAACTGAATCCCGGAGTTGAAGAGATGGGATATGGCAGGCATCCAGCTCAAACTCATGGTGAAGCCCTCTTTCAACAAATGGAGTGTGAGCCAACGTTACAAATTGGGTATCAGCCTGATCCAGTATCAGTGGTGACAGCAGGCCCAAGCATGAGCAATTACATGGCAGGATGGTTACCATAG	735	0.4694	MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEANVSTREALVMELSSQQEYLKLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHLLSEANRSLRQRQLEGYQINPLQLNPGVEEMGYGRHPAQTHGEALFQQMECEPTLQIGYQPDPVSVVTAGPSMSNYMAGWLP	244

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma05g01498	244	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Gma05g01498	244	Coils	Coil	154	174	-	-
	Gma05g01498	244	Gene3D	-	13	83	IPR036879	GO:0003677\|GO:0046983
	Gma05g01498	244	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Gma05g01498	244	Pfam	K-box region	93	174	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Gma05g01498	244	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Gma05g01498	244	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Gma05g01498	244	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Gma05g01498	244	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Gma05g01498	244	CDD	MADS_MEF2_like	2	76	IPR033896	GO:0000977\|GO:0045944
	Gma05g01498	244	ProSiteProfiles	K-box domain profile.	91	182	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Gma05g01498	244	PANTHER	AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG	1	231	-	-
	Gma05g01498	244	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Gma05g01498	244	SUPERFAMILY	SRF-like	2	75	IPR036879	GO:0003677\|GO:0046983
	Gma05g01498	244	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	1	231	-	-
	Gma05g01498	244	Coils	Coil	128	148	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma05g01498	Gma-Chr5	36856858	36864642	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma05g01498	1	244	MADS-box Gene Family	AT1G24260	75.304	4.65e-122	345

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Gma05g01498		K-box	2.1e-26	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma05g01498	-		-	gmx:100778931	479.174

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma05g01498	05	36856858	36864642	Gma08g00980	08	8287481	8294571	GST
	Gma05g01498	05	36856858	36864642	Gma18g00047	18	392264	397142	PCT
	Gma05g01498	05	36856858	36864642	Gma11g02534	11	40442490	40446616	PCT