Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01497 ATGGGGAAGAAGAAGCTGGAGATAAAGCGAATCGAGAACAAAAGCAATCGGCAGATAACATTCTCCAAGAGGCGCAAAGGATTGATGAAGAAAGCCCGCGAGTTATCCATTCTCTGCGATGCGAAGTTGGCGCTGCTCATCTTCTCCAGCACCGGCAAGCTCTACGAGCTTTGCAACGGTGACAGTTTGGCCGAGGTCGTGCAGCGATATTGGGATAACTTAGGAGCGAGCGGTACTGACACAAAGGGACTCCGCTTTGAAATTGCAGATATCTGGTCTGATGAAGCGTTTTCTCAATTGGTCCAAAGCCACTTTGGTGTTTCTGAACTTGAGCATCTGAGTGTGACTGACCTTATGGAACTAGAGAAACTGGTTCATTCTGCTCTTTCGCGAATCAGATCAGCAAAGATGCGATTGATGATGGAATCTGTAGAGAATCTTAAGAAAAAGGAACATATCTTGAGAAATGAAAATGAGCTTTTGGAGAAACAGATTGAGGCACAGAAAAAAGCTGATGACGTCAATAACGTGGTGACACGGTTTATTGACTATGATCAAACAGATCGGGTGACGCATAATCTGCTCCCTGGTTTGTAA 597 0.4506 MGKKKLEIKRIENKSNRQITFSKRRKGLMKKARELSILCDAKLALLIFSSTGKLYELCNGDSLAEVVQRYWDNLGASGTDTKGLRFEIADIWSDEAFSQLVQSHFGVSELEHLSVTDLMELEKLVHSALSRIRSAKMRLMMESVENLKKKEHILRNENELLEKQIEAQKKADDVNNVVTRFIDYDQTDRVTHNLLPGL 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01497 198 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Gma05g01497 198 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma05g01497 198 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma05g01497 198 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma05g01497 198 CDD MADS_MEF2_like 2 70 IPR033896 GO:0000977|GO:0045944
Gma05g01497 198 Pfam K-box region 99 165 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma05g01497 198 PANTHER MADS BOX PROTEIN 1 175 - -
Gma05g01497 198 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma05g01497 198 ProSiteProfiles K-box domain profile. 81 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma05g01497 198 Gene3D - 13 77 IPR036879 GO:0003677|GO:0046983
Gma05g01497 198 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Gma05g01497 198 Coils Coil 144 171 - -
Gma05g01497 198 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma05g01497 198 PANTHER MADS-BOX PROTEIN FLOWERING LOCUS C 1 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01497 Gma-Chr5 36837014 36855016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01497 1 150 MADS-box Gene Family AT5G10140 47.403 2.30e-39 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma05g01497 K-box 3.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01497 K09264 - gmx:100804540 387.497