Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01477 ATGATGGATGTTGCTGAGGTTGAGGAAAATCTGTTTGCTGCAAGTGATGCCAAGTTACATGGACAGATGTGCAAGACTCTTTCTATAATATATTGCAAAGTATTGTCTGTATTTCCTTCTTTAGAAGCTGCTAGGCCTAGGAGTAAATCTGGTATTCAGGCATTATGTTCATTGCATGTAGCCTTGGAGAAAGTAAAGAATGTTCTTCAGCACTGCTCGGAGTGTAGTAAACTTTACTTGGCTATAACTGGAGATTCTGTCCTCCTAAAATTTGAGAAGGCTAAATGTGCTCTTGAAGATAGTCTTAGACGGGTGGAAGATATTGTTCCACAATCTATTGGGTGTCAGGTTCAGGAGATTGTGAATGAATTTGCAACAATAGAATTTGCACTTGACCCATCAGAGAAGCAAGTTGGTGATGATTTAATTGCATTGCTCCAACAGGGAAGAAAGTTTAATGACTCTAATGACAGCAATGAGCTTGAATCTTTTCACCAGGCTGCTACTAGACTTGGAATTACATCTTCAAGAGCAGCTCTTGCTGAAAGAAGAGCTCTCAAGAAACTCATAGAAAGGGCTCAATCTGAGGAAGACAAGCGGAAGGAATTAATTATTGCATATCTTTTACATCTTATGAGGAAATACTCCAAGTTATTTAGAAACGAGTTCTCAGATGACAATGATTCTCAGGGTTCTGCACCTTGTTCTCCCGTTCAAGGATCTATCGAGGATAGTGTTCCTGGTAGTCATTGTCAAGCCTTTGACAGACAACTTTCAAAATTCAGTTGCTTTAATTTCAAACCAAATATTAGTAGGACATCTGGGCAGATGCCTCTTCCACCTGAAGAGTTAAGGTGTCCAATATCTCTGCAACTCATGTATGATCCTGTTATCATTGCTTCTGGGCAGACTTATGAAAGGGTTTGTATAGAGAAATGGTTCAGTGATGGGCACAACAACTGCCCAAAGACCCAGCAGAAACTTTCACATCTTTGTTTGACTCCTAATTATTGTGTTAAGGGCCTTGTTTCTAGTTGGTGTGAACAAAATGGAGTTCCTATTCCTGAAGGCCCTCCTGAATCTCTTGATCTTAACTACTGGGGATTGGTATTATCAGAGTCTGAATCTACAAATTCAAAATCTGTAAATAGTGTCAGCTCTTGCAAGTTGAAGGGTGTCCATGTGGTTCCTTTGGAAGAGAGTGGTATCTCAGAGGAATCTGTGGAAAATGGAACTGAAAGTGTTTCTGCACAAGAGGAAGACACTGAGCAGTATTTTAGCTTTCTGAAAGTCTTGACTGAGGTGAACAATTGGAGGAAGCAATGTGAAGTAGTAGAACAGTTAAGGCTGCTGCTGAGGGATGACGAGGAAGCCAGGATTTTTATGGGGGCAAATGGGTTTGTTGAAGCACTTTTGCAGTTTTTGCAATCAGCTGTGCGTGAAGGTAGTTTGATGGCTCTGGAAAGTGGAGCAATGGCTCTCTTCAACCTGGCTGTGAATAATAACAGAAATAAGGAAATTATGTTATCGGCTGGAGTATTATCATTGTTGGAGGAAATGATTCCTAAAACTAGTTCTTATGGTTGTACAACTGCTCTTTATTTGAGTCTCTCTTGCCTTGAAGAAGCCAAGCCTATGATTGGCATGAGTCAGGCTGTCCAGTTCCTAATCCAGCTTCTTCAATCGGACTCTGATGTTCAATGCAAGCAAGATTCTCTCCATGCTCTCTATAATCTTTCTACTGTGCCCTCAAATATTCCATACCTCCTTTCATCTGGCGTCATTAGTGGCTTACAATCCCTTCTTGTAGGCGAGGGGGATTGCATTTGGACAGAAAAATGCGTAGCTGTTTTGATAAATTTAGCTACTTCTCAAGTTGGAAGGGAGGAAATTGTATCTACTCCTGGACTCATTGGTGCATTGGCTTCGATATTGGACACCGGTGAGCTCATAGAACAGGAGCAAGCTGTCTCTTGTCTCCTAATTTTGTGCAATAGAAGTGAGGAATGCAGTGAGATGGTCCTGCAGGAAGGGGTTATACCAGCATTGGTTTCAATATCAGTGAATGGAACTCCAAGAGGTCAAGAAAAAGCTCAGAAACTCTTGATGTTGTTCCGAGAGCAGCGACGAGACCCTTCACCAGTTAAGACACATCAGTGCTCACCTGAAGCTAGTGATTTGTCTATGCCGCCTGCTGAAATGAAACCGCTATGCAAGTCCATTTCAAGAAGAAAGTCTGGGAGAGCTTTTAGCTTTTTCTGGAAAAACAAGAGCTATTCTGTATACCAGTGTTAA 2295 0.4139 MMDVAEVEENLFAASDAKLHGQMCKTLSIIYCKVLSVFPSLEAARPRSKSGIQALCSLHVALEKVKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALEDSLRRVEDIVPQSIGCQVQEIVNEFATIEFALDPSEKQVGDDLIALLQQGRKFNDSNDSNELESFHQAATRLGITSSRAALAERRALKKLIERAQSEEDKRKELIIAYLLHLMRKYSKLFRNEFSDDNDSQGSAPCSPVQGSIEDSVPGSHCQAFDRQLSKFSCFNFKPNISRTSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNNCPKTQQKLSHLCLTPNYCVKGLVSSWCEQNGVPIPEGPPESLDLNYWGLVLSESESTNSKSVNSVSSCKLKGVHVVPLEESGISEESVENGTESVSAQEEDTEQYFSFLKVLTEVNNWRKQCEVVEQLRLLLRDDEEARIFMGANGFVEALLQFLQSAVREGSLMALESGAMALFNLAVNNNRNKEIMLSAGVLSLLEEMIPKTSSYGCTTALYLSLSCLEEAKPMIGMSQAVQFLIQLLQSDSDVQCKQDSLHALYNLSTVPSNIPYLLSSGVISGLQSLLVGEGDCIWTEKCVAVLINLATSQVGREEIVSTPGLIGALASILDTGELIEQEQAVSCLLILCNRSEECSEMVLQEGVIPALVSISVNGTPRGQEKAQKLLMLFREQRRDPSPVKTHQCSPEASDLSMPPAEMKPLCKSISRRKSGRAFSFFWKNKSYSVYQC 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01477 764 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Gma05g01477 764 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 353 IPR013083 -
Gma05g01477 764 Gene3D - 400 713 IPR011989 -
Gma05g01477 764 SMART arm_5 455 499 IPR000225 GO:0005515
Gma05g01477 764 SMART arm_5 540 581 IPR000225 GO:0005515
Gma05g01477 764 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Gma05g01477 764 PANTHER U BOX DOMAIN-CONTAINING 2 756 - -
Gma05g01477 764 SUPERFAMILY ARM repeat 429 706 IPR016024 -
Gma05g01477 764 MobiDBLite consensus disorder prediction 710 729 - -
Gma05g01477 764 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Gma05g01477 764 CDD RING-Ubox_PUB 284 326 IPR045210 -
Gma05g01477 764 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 512 IPR000225 GO:0005515
Gma05g01477 764 Coils Coil 176 206 - -
Gma05g01477 764 SUPERFAMILY RING/U-box 277 355 - -
Gma05g01477 764 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 756 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01477 Gma-Chr5 36541817 36546607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01477 2 763 U-box Gene Family AT1G24330 66.710 0.0 1029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01477 - - gmx:100794099 1467.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01477 05 36541817 36546607 Gma08g00958 08 8058855 8063131 GST
Gma18g00077 18 619464 623262 Gma05g01477 05 36541817 36546607 PCT
Gma11g02504 11 40222143 40227526 Gma05g01477 05 36541817 36546607 PCT
Gma05g01477 05 36541817 36546607 Gma18g00077 18 619464 623262 PCT
Gma05g01477 05 36541817 36546607 Gma11g02504 11 40222143 40227526 PCT